1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
|
"""Test functionalities of model component annotation functions."""
from cobra.core import Model, Reaction
from cobra.manipulation import add_SBO
def test_sbo_annotation(model: Model) -> None:
"""Test SBO annotation function."""
rxns = model.reactions
rxns.EX_o2_e.annotation.clear()
fake_DM = Reaction("DM_h_c")
model.add_reactions([fake_DM])
fake_DM.add_metabolites({model.metabolites.get_by_id("h_c"): -1})
# this exchange will be set wrong. The function should not overwrite
# an existing SBO annotation
rxns.get_by_id("EX_h_e").annotation["sbo"] = "SBO:0000628"
add_SBO(model)
assert rxns.EX_o2_e.annotation["sbo"] == "SBO:0000627"
assert rxns.DM_h_c.annotation["sbo"] == "SBO:0000628"
assert rxns.EX_h_e.annotation["sbo"] == "SBO:0000628"
|
