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|
[tox]
envlist = isort, black, flake8, safety, py3{8,9,10,11}, coverage
[gh-actions]
python =
3.8: install, safety, py38
3.9: install, py39
3.10: install, py310, coverage
3.11: install, py311
[testenv]
extras =
array
deps=
jsonschema
osqp~=0.6 ; python_version < "3.10"
pytest
pytest-benchmark~=4.0
pytest-mock
pytest-raises
commands =
pytest {posargs: --benchmark-skip}
[testenv:coverage]
setenv = SKIP_MP = 1
extras =
array
deps=
jsonschema
osqp~=0.6 ; python_version < "3.10"
pytest
pytest-benchmark~=4.0
pytest-cov
pytest-mock
pytest-raises
commands =
pytest --cov=cobra --cov-report=xml {posargs: --benchmark-skip}
[testenv:isort]
skip_install = True
deps=
isort
commands=
isort --check-only --diff {toxinidir}/src/cobra {toxinidir}/setup.py {toxinidir}/tests
[testenv:black]
skip_install = True
deps=
black
commands=
black --check --diff {toxinidir}/src/cobra {toxinidir}/setup.py {toxinidir}/tests
[testenv:flake8]
skip_install = True
deps=
flake8
flake8-docstrings
flake8-bugbear
commands=
flake8 {toxinidir}/src/cobra {toxinidir}/setup.py {toxinidir}/tests
[testenv:safety]
deps=
safety
commands=
safety check --full-report -i 70612
[testenv:install]
skip_install = True
deps=
build
twine
commands=
pip check {toxinidir}
python -m build {toxinidir}
twine check {toxinidir}/dist/*
################################################################################
# Testing tools configuration #
################################################################################
[pytest]
testpaths =
tests
markers =
raises
[coverage:paths]
source =
src/cobra
*/site-packages/cobra
[coverage:run]
branch = true
parallel = true
[coverage:report]
exclude_lines =
# Have to re-enable the standard pragma
pragma: no cover
precision = 2
[isort]
skip = __init__.py
profile = black
lines_after_imports = 2
known_first_party = cobra
known_third_party =
appdirs
depinfo
diskcache
future
httpx
libsbml
numpy
optlang
pandas
pydantic
pytest
rich
ruamel.yaml
scipy
swiglpk
[flake8]
exclude =
__init__.py
max-line-length = 88
# The following conflict with `black` which is the more pedantic.
extend-ignore =
E203
W503
D202
|
