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Index: python-cogent-1.4.1/cogent/align/dp_calculation.py
===================================================================
--- python-cogent-1.4.1.orig/cogent/align/dp_calculation.py 2010-06-25 18:29:53.790029187 +0200
+++ python-cogent-1.4.1/cogent/align/dp_calculation.py 2010-06-25 18:29:58.700028486 +0200
@@ -1,4 +1,4 @@
-#!/usr/bin/env/python
+#!/usr/bin/python
from cogent.maths.markov import SiteClassTransitionMatrix
from cogent.recalculation.definition import PositiveParamDefn, \
Index: python-cogent-1.4.1/cogent/data/molecular_weight.py
===================================================================
--- python-cogent-1.4.1.orig/cogent/data/molecular_weight.py 2010-06-25 18:29:27.460027576 +0200
+++ python-cogent-1.4.1/cogent/data/molecular_weight.py 2010-06-25 18:29:33.790026526 +0200
@@ -1,4 +1,4 @@
-#!/usr/bin/env Python
+#!/usr/bin/python
"""Data for molecular weight calculations on proteins and nucleotides."""
__author__ = "Rob Knight"
Index: python-cogent-1.4.1/cogent/format/text_tree.py
===================================================================
--- python-cogent-1.4.1.orig/cogent/format/text_tree.py 2010-06-25 18:26:20.110027538 +0200
+++ python-cogent-1.4.1/cogent/format/text_tree.py 2010-06-25 18:26:30.180027920 +0200
@@ -1,4 +1,4 @@
-#!/bin/env python
+#!/usr/bin/python
# file text_tree.py
"""Simple base text representation of phylo tree."""
Index: python-cogent-1.4.1/cogent/phylo/maximum_likelihood.py
===================================================================
--- python-cogent-1.4.1.orig/cogent/phylo/maximum_likelihood.py 2010-06-25 18:27:03.970027345 +0200
+++ python-cogent-1.4.1/cogent/phylo/maximum_likelihood.py 2010-06-25 18:27:48.590027730 +0200
@@ -1,4 +1,4 @@
-#!/usr/bin/env python'
+#!/usr/bin/python
from tree_space import TreeEvaluator, ancestry2tree
from least_squares import WLS
from math import exp
@@ -68,4 +68,4 @@
return LogLikelihoodScoredTreeCollection(results)
-
\ No newline at end of file
+
Index: python-cogent-1.4.1/cogent/recalculation/__init__.py
===================================================================
--- python-cogent-1.4.1.orig/cogent/recalculation/__init__.py 2010-06-25 18:28:36.420027396 +0200
+++ python-cogent-1.4.1/cogent/recalculation/__init__.py 2010-06-25 18:28:42.280028115 +0200
@@ -1,4 +1,4 @@
-#!/usr/bin/envthon
+#!/usr/bin/python
__all__ = ['array', 'calculation', 'definition', 'scope', 'setting']
__author__ = "Peter Maxwell"
Index: python-cogent-1.4.1/cogent/recalculation/setting.py
===================================================================
--- python-cogent-1.4.1.orig/cogent/recalculation/setting.py 2010-06-25 18:27:33.160026774 +0200
+++ python-cogent-1.4.1/cogent/recalculation/setting.py 2010-06-25 18:27:42.830027966 +0200
@@ -1,4 +1,4 @@
-#!/usr/bin/env python'
+#!/usr/bin/python
"""Instances of these classes are assigned to different parameter/scopes
by a parameter controller"""
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