File: community_analysis.rst

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******************
Community analysis
******************

alpha diversity
===============

Rarefaction
-----------

*To be written.*

Parametric methods
------------------

*To be written.*

Nonparametric methods
---------------------

*To be written.*

beta diversity
==============

Unifrac
-------

*To be written.*

Taxon-based
-----------

*To be written.*

Taxonomy
========

*To be written.*

.. need to decide on methods here