1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
|
#!/usr/bin/env python
from cogent.util.unit_test import TestCase, main
from cogent.core.info import Info
from cogent.parse.ilm import ilm_parser
__author__ = "Shandy Wikman"
__copyright__ = "Copyright 2007-2009, The Cogent Project"
__contributors__ = ["Shandy Wikman"]
__license__ = "GPL"
__version__ = "1.4.1"
__maintainer__ = "Shandy Wikman"
__email__ = "ens01svn@cs.umu.se"
__status__ = "Development"
class IlmParserTest(TestCase):
"""Provides tests for ILM RNA secondary structure format parsers"""
def setUp(self):
"""Setup function"""
#output
self.ilm_out = ILM
#expected
self.ilm_exp = [[(0,13),(1,12),(2,11),(6,7)]]
def test_ilm_output(self):
"""Test for ilm format"""
obs = ilm_parser(self.ilm_out)
self.assertEqual(obs,self.ilm_exp)
ILM = ['\n', 'Final Matching:\n', '1 14\n', '2 13\n', '3 12\n', '4 0\n',
'5 0\n', '6 0\n', '7 8\n', '8 7\n', '9 0\n', '10 0\n', '11 0\n', '12 3\n',
'13 2\n', '14 1\n']
if __name__ == '__main__':
main()
|
