1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
|
#!/usr/bin/env python
import os, tempfile
from cogent.util.unit_test import TestCase, main
from cogent.parse.msms import parse_VertFile
try:
from cStringIO import StringIO
except ImportError:
from StringIO import StringIO
__author__ = "Marcin Cieslik"
__copyright__ = "Copyright 2009, The Cogent Project"
__contributors__ = ["Marcin Cieslik"]
__license__ = "GPL"
__version__ = "1.4.1"
__maintainer__ = "Marcin Cieslik"
__email__ = "mpc4p@virginia.edu"
__status__ = "Development"
class MsmsTest(TestCase):
"""Tests for Msms application output parsers"""
def setUp(self):
vs = "1. 2. 3.\n" + \
"4. 5. 6.\n" + \
"7. 8. 9.\n"
self.vertfile = StringIO(vs)
def test_parseVertFile(self):
out_arr = parse_VertFile(self.vertfile)
assert out_arr.dtype == 'float64'
assert out_arr.shape == (3,3)
assert out_arr[0][0] == 1.
if __name__ == '__main__':
main()
|
