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#!/usr/bin/env python
from cogent.parse.bpseq import _parse_residues
__author__ = "Shandy Wikman"
__copyright__ = "Copyright 2007-2012, The Cogent Project"
__contributors__ = ["Shandy Wikman"]
__license__ = "GPL"
__version__ = "1.5.3"
__maintainer__ = "Shandy Wikman"
__email__ = "ens01svn@cs.umu.se"
__status__ = "Development"
def contrafold_parser(lines):
"""Parser Contarfold output
Returns a list containing sequence and structure(in pair format)
Ex: [[sequence,[structure]]]
Tested in tests for bpseq)
"""
result = []
seq,struct = _parse_residues(lines,True)
result.append([seq,struct])
return result
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