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Document: python-cogent-doc
Title: PyCogent documentation
Author: PyCogent Team
Abstract: PyCogent is a software library for genomic biology. 
 It is a fully integrated and thoroughly tested framework for: 
  * controlling third-party applications; 
  * devising workflows; 
  * querying databases; 
  * conducting novel probabilistic analyses of biological sequence 
    evolution; 
  * and generating publication quality graphics. 
 It is distinguished by many unique built-in capabilities (such as 
 true codon alignment) and the frequent addition of entirely new 
 methods for the analysis of genomic data.
 .
 Our primary goal is to provide a collection of rigourously validated 
 tools for the manipulation and analysis of genome biology data sets. 
 The project is routinely employed in numerous labs across the world 
 and has provided essential capabilities for many high profile 
 publications, e.g. Nature 2009 457:480-4, PNAS 2008 105:17994-9, 
 Science 2008 320:1647-51, Nature 2008 453: 175-83 and 
 Nat Genet 2007 39: 1261-5.
Section: Science/Biology

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