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#################
PyCogent Cookbook
#################
Contents:
.. toctree::
:maxdepth: 3
introduction
tips_for_using_python
manipulating_biological_data
accessing_databases
analysis_of_sequence_composition
sequence_similarity_search
controlling_third_party_applications
blast
building_alignments
building_a_tree_of_life
building_phylogenies
using_likelihood_to_perform_evolutionary_analyses
sequence_simulation
standard_statistical_analyses
multivariate_data_analysis
community_analysis
dealing_with_hts_data
hpc_environments
useful_utilities
code_development
.. managing_alphabet
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