File: dists_for_phylo.pickle

package info (click to toggle)
python-cogent 1.9-9
  • links: PTS, VCS
  • area: main
  • in suites: stretch
  • size: 19,480 kB
  • ctags: 27,660
  • sloc: python: 137,483; makefile: 148; sh: 10
file content (563 lines) | stat: -rw-r--r-- 5,052 bytes parent folder | download | duplicates (5)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
(dp1
(S'SpermWhale'
p2
S'Jackrabbit'
p3
tp4
F0.23558133673269555
s(S'LeafNose'
p5
S'TreeShrew'
p6
tp7
F0.22278929978754272
s(g5
S'Hedgehog'
p8
tp9
F0.25237868673223468
s(g3
S'Anteater'
p10
tp11
F0.23657337673373716
s(g6
S'Gorilla'
p12
tp13
F0.18676231969492157
s(S'FreeTaile'
p14
S'Llama'
p15
tp16
F0.16003181770424132
s(g14
S'Pangolin'
p17
tp18
F0.1603579293663818
s(S'Rat'
p19
S'LesserEle'
p20
tp21
F0.42828304384234206
s(g15
g6
tp22
F0.20581286739688848
s(g8
S'Wombat'
p23
tp24
F0.61998461379703196
s(g12
g3
tp25
F0.21764010128591116
s(g12
S'AfricanEl'
p26
tp27
F0.17413706816807067
s(g26
S'GoldenMol'
p28
tp29
F0.16381078019769496
s(g12
g28
tp30
F0.21665860241388582
s(g5
S'Mole'
p31
tp32
F0.20376495738316491
s(g6
g20
tp33
F0.2804198266016712
s(g15
g23
tp34
F0.56706563327409432
s(g17
g10
tp35
F0.18634249480113463
s(g14
g28
tp36
F0.23896070726886304
s(g2
g26
tp37
F0.19175198045399872
s(g2
g8
tp38
F0.24161185834356419
s(g15
S'Sloth'
p39
tp40
F0.16754632039974526
s(g3
g28
tp41
F0.28529535427776653
s(g17
g23
tp42
F0.55554889797566909
s(g19
g23
tp43
F0.68514773363006787
s(g14
g8
tp44
F0.24840744685320804
s(g5
g20
tp45
F0.26814374655962026
s(g2
g31
tp46
F0.20381415104564346
s(g2
g19
tp47
F0.36507283188667267
s(g19
g26
tp48
F0.36098887414715852
s(g2
g10
tp49
F0.18660004132482483
s(g5
g12
tp50
F0.17706328308590918
s(g2
g6
tp51
F0.21142599693080405
s(g6
g26
tp52
F0.21295142747772908
s(g6
g3
tp53
F0.24464518837038263
s(g15
g26
tp54
F0.17670838821812171
s(g39
g20
tp55
F0.24408791205710079
s(g14
g2
tp56
F0.15881905159696566
s(g5
g19
tp57
F0.35294087691991094
s(g12
g39
tp58
F0.1684966665016325
s(g8
g26
tp59
F0.25963862266271504
s(g15
g19
tp60
F0.35372121548659219
s(g31
g26
tp61
F0.22043254465350556
s(g3
g20
tp62
F0.31724601399917407
s(g12
g19
tp63
F0.31928646619856205
s(g14
g19
tp64
F0.35853994863389005
s(g19
g10
tp65
F0.36076410676098597
s(g5
g2
tp66
F0.1552418100705735
s(g8
g12
tp67
F0.25351166585922669
s(g15
g2
tp68
F0.11541046335984746
s(g14
g39
tp69
F0.17429921193670331
s(g6
g10
tp70
F0.21793050355674712
s(g6
g23
tp71
F0.54524246572012069
s(g5
g15
tp72
F0.15371168872395888
s(g17
g26
tp73
F0.18307091636646436
s(g10
g23
tp74
F0.54283966576227993
s(g6
g39
tp75
F0.20347481450512622
s(g39
g28
tp76
F0.19626573589070589
s(g31
g10
tp77
F0.22934425261435534
s(g5
g39
tp78
F0.17481118696254297
s(g10
g20
tp79
F0.26273051893624683
s(g8
g39
tp80
F0.25507622514211981
s(g14
g12
tp81
F0.17645529962671383
s(g28
g23
tp82
F0.57958513433104586
s(g6
g28
tp83
F0.2523275028705062
s(g2
g28
tp84
F0.23379205703803776
s(g26
g20
tp85
F0.202434309645733
s(g14
g26
tp86
F0.19290342630687046
s(g14
g5
tp87
F0.13259776625919503
s(g39
g23
tp88
F0.52862866877459347
s(g8
g6
tp89
F0.28306453011242577
s(g31
g39
tp90
F0.21055499043334253
s(g17
g19
tp91
F0.34953396164153971
s(g5
g17
tp92
F0.15611423240637898
s(g20
g23
tp93
F0.57341059979350384
s(g15
g3
tp94
F0.23579080572698605
s(g14
g31
tp95
F0.2035375708124624
s(g10
g26
tp96
F0.17198063443413589
s(g31
g8
tp97
F0.2514186346183323
s(g2
g12
tp98
F0.17427958001912375
s(g12
g23
tp99
F0.54897931148601919
s(g31
g3
tp100
F0.26305710513226543
s(g31
g23
tp101
F0.58419001011914529
s(g17
g2
tp102
F0.15061801593919677
s(g31
g6
tp103
F0.23157223340912828
s(g31
g12
tp104
F0.20030071593079626
s(g5
g28
tp105
F0.2356211665616679
s(g31
g20
tp106
F0.30047877128702466
s(g2
g23
tp107
F0.58717050903439605
s(g14
g3
tp108
F0.23535606447601404
s(g15
g28
tp109
F0.22391018143489855
s(g3
g23
tp110
F0.60050563531851719
s(g19
g28
tp111
F0.38781922994069989
s(g17
g31
tp112
F0.19663617963790703
s(g14
g20
tp113
F0.27697713155467224
s(g17
g28
tp114
F0.22139844503006362
s(g15
g8
tp115
F0.22963441872671392
s(g2
g39
tp116
F0.17537168206526232
s(g8
g19
tp117
F0.44528498187553256
s(g39
g26
tp118
F0.15707714792985861
s(g8
g10
tp119
F0.262069531052805
s(g15
g20
tp120
F0.26186754674282603
s(g15
g31
tp121
F0.19500762515085551
s(g5
g23
tp122
F0.56372551302180518
s(g5
g10
tp123
F0.18431861844687059
s(g31
g28
tp124
F0.26123994830524716
s(g12
g20
tp125
F0.2556467459575969
s(g15
g10
tp126
F0.18649954620741344
s(g15
g12
tp127
F0.16892629241793777
s(g10
g39
tp128
F0.10430995903020382
s(g14
g23
tp129
F0.5724514681894517
s(g12
g10
tp130
F0.17953067369611775
s(g17
g20
tp131
F0.26576072655285454
s(g17
g12
tp132
F0.17154547111760352
s(g28
g20
tp133
F0.23784467508495774
s(g17
g6
tp134
F0.20514478285357235
s(g14
g6
tp135
F0.21926904153263413
s(g17
g3
tp136
F0.22895223603506784
s(g6
g19
tp137
F0.3643788194875382
s(g8
g28
tp138
F0.30424919454836291
s(g14
g10
tp139
F0.19114094081112373
s(g17
g8
tp140
F0.23876822737703321
s(g26
g23
tp141
F0.5387491498191419
s(g5
g26
tp142
F0.18819818650279263
s(g3
g26
tp143
F0.23469538913725793
s(g3
g39
tp144
F0.22055976180843367
s(g19
g39
tp145
F0.34696523857967398
s(g31
g19
tp146
F0.39839525397146391
s(g8
g20
tp147
F0.34529762840916212
s(g17
g39
tp148
F0.17675542635071309
s(g17
g15
tp149
F0.15559649688143493
s(g2
g20
tp150
F0.26909857983936736
s(g10
g28
tp151
F0.20422976142040555
s(g8
g3
tp152
F0.30157557875560231
s(g3
g19
tp153
F0.3759948154971699
s(g5
g3
tp154
F0.22443287357052219
s.