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#!/usr/bin/env python
"""Tests for molecular weight.
"""
from cogent.util.unit_test import TestCase, main
from cogent.data.molecular_weight import WeightCalculator, DnaMW, RnaMW, \
ProteinMW
__author__ = "Rob Knight"
__copyright__ = "Copyright 2007-2016, The Cogent Project"
__credits__ = ["Rob Knight"]
__license__ = "GPL"
__version__ = "1.9"
__maintainer__ = "Rob Knight"
__email__ = "rob@spot.colorado.edu"
__status__ = "Production"
class WeightCalculatorTests(TestCase):
"""Tests for WeightCalculator, which should calculate molecular weights.
"""
def test_call(self):
"""WeightCalculator should return correct molecular weight"""
r = RnaMW
p = ProteinMW
self.assertEqual(p(''), 0)
self.assertEqual(r(''), 0)
self.assertFloatEqual(p('A'), 89.09)
self.assertFloatEqual(r('A'), 375.17)
self.assertFloatEqual(p('AAA'), 231.27)
self.assertFloatEqual(r('AAA'), 1001.59)
self.assertFloatEqual(r('AAACCCA'), 2182.37)
self.assertFloatEqual(p('MVQQAESLEAESNLPREALDTEEGEFMACSPVALDESDPDWCKTASGHIKRPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGKR\
WKMLKDSEKIPFIREAERLRLKHMADYPDYKYRPRKKPKMDPSAKPSASQSPEKSAAGGGGGSAGGGAGGAKTSKGSSKKCGKLKA\
PAAAGAKAGAGKAAQSGDYGGAGDDYVLGSLRVSGSGGGGAGKTVKCVFLDEDDDDDDDDDELQLQIKQEPDEEDEEPPHQQLLQP\
PGQQPSQLLRRYNVAKVPASPTLSSSAESPEGASLYDEVRAGATSGAGGGSRLYYSFKNITKQHPPPLAQPALSPASSRSVSTSSS\
SSSGSSSGSSGEDADDLMFDLSLNFSQSAHSASEQQLGGGAAAGNLSLSLVDKDLDSFSEGSLGSHFEFPDYCTPELSEMIAGDWL\
EANFSDLVFTY'), 46685.97)
#run if called from command-line
if __name__ == "__main__":
main()
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