File: manipulating_biological_data.rst

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****************************
Manipulating biological data
****************************

.. authors, Gavin Huttley, Kristian Rother, Patrick Yannul

Sequences and Alignments
========================

.. toctree::
    :maxdepth: 1
    
    loading_sequences
    alignments
    DNA_and_RNA_sequences
    protein_sequences
    annotations
    moltypes
    alphabet

Genetic code
============

.. toctree::
    :maxdepth: 1

    what_codes
    genetic_code

Trees
=====

.. toctree::
    :maxdepth: 1

    simple_trees