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#########
Tutorials
#########
.. note:: See :ref:`data_links` for data the files used.
*****************
Data manipulation
*****************
.. toctree::
:maxdepth: 1
seq_features
complete_seq_features
align_codons_to_protein
manipulating_tree_nodes
*********************
General data analysis
*********************
.. toctree::
:maxdepth: 1
period_estimation
*******************
Modelling Evolution
*******************
.. toctree::
:maxdepth: 1
simple
relative_rate
neutral_test
scope_model_params_on_trees
codon_models
empirical_protein_models
testing_multi_loci
simulate_alignment
parametric_bootstrap
coevolution
rate_heterogeneity
hmm_par_heterogeneity
***************************
Phylogenetic Reconstruction
***************************
.. toctree::
:maxdepth: 1
calculate_pairwise_distances
calculate_neigbourjoining_tree
calculate_UPGMA_cluster
phylo_by_ls
*********
Utilities
*********
.. toctree::
:maxdepth: 1
parallel
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