1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
|
.. jupyter-execute::
:hide-code:
import set_working_directory
Angular Dendrogram Style
========================
This is a left-right style. You'll note that there's overlap of edges at the bottom -- a known issue with this display style.
.. jupyter-execute::
from cogent3.app import io
reader = io.load_json()
ens_tree = reader("data/GN-tree.json")
fig = ens_tree.get_figure(style="angular", width=600, height=600)
fig.show()
With Contemporaneous Tips
-------------------------
.. jupyter-execute::
fig.contemporaneous = True
fig.show()
.. jupyter-execute::
:hide-code:
outpath = set_working_directory.get_thumbnail_dir() / "plot_tree-angular.png"
fig.write(outpath)
|
