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.. jupyter-execute::
:hide-code:
import set_working_directory
Showing Bootstrap Support
=========================
We use a tree saved in ``json`` format from a 100 replicate bootstrap resamplings. The ``show_support=True`` argument controls whether or not to display support. The ``threshold=0.8`` argument indicates only nodes with a support level ≤0.8 will have support text displayed.
.. jupyter-execute::
from cogent3.app import io
reader = io.load_json()
tree = reader("data/tree-with-support.json")
fig = tree.get_figure(show_support=True, threshold=0.8)
fig.scale_bar = None
fig.show(width=500, height=400)
Change the placement of support text
------------------------------------
The support text is positioned relative to the ``x``, ``y`` coordinates of the tree node. Control over support text placement is achieved using the ``support_xshift`` and ``support_yshift`` attributes. These are expressed in terms of pixels.
To place the support text internal to the node, we set the ``yshift=0`` (so at the same y-value of the node) and xshift it to the right using a positive integer.
.. jupyter-execute::
fig.support_xshift = 15
fig.support_yshift = 0
fig.show(width=500, height=400)
.. jupyter-execute::
:hide-code:
outpath = set_working_directory.get_thumbnail_dir() / "plot_tree-support.png"
fig.write(outpath)
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