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LOCUS AE017341 6201 bp DNA linear PLN 08-MAR-2010
DEFINITION Cryptococcus neoformans var. neoformans JEC21 chromosome 1,
complete sequence.
ACCESSION AE017341 REGION: 32900..39100
VERSION AE017341.1 GI:57222571
DBLINK BioProject: PRJNA13856
KEYWORDS .
SOURCE Cryptococcus neoformans var. neoformans JEC21 (Filobasidiella
neoformans var. neoformans strain JEC21)
ORGANISM Cryptococcus neoformans var. neoformans JEC21
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina;
Tremellomycetes; Tremellales; Tremellaceae; Filobasidiella;
Filobasidiella/Cryptococcus neoformans species complex.
REFERENCE 1 (bases 1 to 6201)
AUTHORS Loftus,B.J., Fung,E., Roncaglia,P., Rowley,D., Amedeo,P., Bruno,D.,
Vamathevan,J., Miranda,M., Anderson,I.J., Fraser,J.A., Allen,J.E.,
Bosdet,I.E., Brent,M.R., Chiu,R., Doering,T.L., Donlin,M.J.,
D'Souza,C.A., Fox,D.S., Grinberg,V., Fu,J., Fukushima,M.,
Haas,B.J., Huang,J.C., Janbon,G., Jones,S.J.M., Krzywinski,M.I.,
Kwon-Chung,J.K., Lengeler,K.B., Maiti,R., Marra,M.A., Marra,R.E.,
Mathewson,C.A., Mitchell,T.G., Pertea,M., Riggs,F.R.,
Salzberg,S.L., Shvartsbeyn,A., Schein,J.E., Shin,H., Specht,C.A.,
Suh,B., Tenney,A., Utterback,T., Wickes,B.L., Wye,N.H.,
Kronstad,J., Lodge,J.K., Heitman,J., Davis,R.W., Fraser,C.M. and
Hyman,R.W.
TITLE The genome and transcriptome of Cryptococcus neoformans, a
basidiomycete fungal pathogen of humans
JOURNAL Science (2005) In press
REFERENCE 2 (bases 1 to 6201)
AUTHORS Loftus,B., Amedeo,P., Roncaglia,P., Vamathevan,J., Utterback,T.,
Van Aken,S. and Fraser,C.
TITLE Direct Submission
JOURNAL Submitted (20-MAY-2004) The Institute for Genomic Research, 9712
Medical Center Dr, Rockville, MD 20850, USA
COMMENT This record represents the complete annotated sequence of the C.
neoformans JEC21 genome. A small number of gaps exist which are
represented by NNNNs within the final sequence. The genome has been
annotated by TIGR and the annotation data is available for viewing
and download from the TIGR database
(http://www.tigr.org/tdb/e2k1/cna1/).
FEATURES Location/Qualifiers
source 1..6201
/organism="Cryptococcus neoformans var. neoformans JEC21"
/mol_type="genomic DNA"
/strain="JEC21"
/variety="neoformans"
/serotype="D"
/db_xref="taxon:214684"
/chromosome="1"
/note="MAT-alpha"
repeat_region 617..690
/rpt_type=tandem
/rpt_unit_seq="cat"
/satellite="microsatellite"
gene 2952..5711
/locus_tag="CNA00110"
mRNA join(2952..4023,4075..4608,4673..4728,4785..5121,
5170..5318,5367..5711)
/locus_tag="CNA00110"
/product="conserved hypothetical protein"
/note="supported by cDNAs and ESTs:
gi|41530289|gb|CF676130.1,gi|41537787|gb|CF683628.1,
gi|41537795|gb|CF683636.1,gi|41541034|gb|CF686875.1,
gi|41543525|gb|CF689366.1,gi|41556552|gb|CF702393.1,
gi|41556564|gb|CF702405.1,gi|41558523|gb|CF704364.1,
gi|41558526|gb|CF704367.1,gi|41569682|gb|CF715523.1,
gi|41569694|gb|CF715535.1,gi|41571148|gb|CF716989.1,
gi|41571158|gb|CF716999.1"
CDS join(2963..4023,4075..4608,4673..4728,4785..5121,
5170..5318,5367..5641)
/locus_tag="CNA00110"
/note="GO_component: GO:0005634 - nucleus;
GO_function: GO:0016563 - transcriptional activator
activity;
GO_process: GO:0019878 - lysine biosynthesis, aminoadipic
pathway"
/codon_start=1
/product="conserved hypothetical protein"
/protein_id="AAW41429.1"
/db_xref="GI:57223385"
/translation="MAGYDARYGNPLDPMSGGRPSPPETSQQDAYEYSKHGSSSGYLG
QLPLGADSAQAETASALRTLFGEGADVQALQEPPNQINTLAEGAAVAETGGVLGGDTT
RSDNEALAIDPSLSEQAAPAPKDSTETPDDRSRSPSSGNHHHHHPAVKRKATSRAGML
ARGGACEFCKRRKLKCSAELPACANCVKSGKECVYAQKKQRSRVKVLEDRLQELEKRL
EQGQAGAASASGGDSGAHAASSVYTAPSLGSGGGSELTVEQTLVHNVDPSLLPPSEYD
EAFILHDFDSFADMRKQETQLEPDLMTLADAAAADTPAAAAAETNDPWAKMSPEEIVK
EIIKVATGGKGEGERIISHLVQTYMNSTVNTWHPLVIPPMDLVSRVSRTTPDPIHPTL
LLSLIPALLPLSPIQSLRHPAIPLLLLPHARAHSVQAITQSDPRVLDTIIAGVSRAYS
FFNEAKNIDGWVDCVAATSLVRAAGLTKQGGVGERFVPEDRVPAERLAKRRREAGLRA
LMHKGAIVPPPESWYQFGQRVNLFWTSYICDRAAAIGWGWPSSYNDEDITTPWPKDDY
KSVQALLDDTTIHTFLSPLAPAPAPATPDSDLCAQAKSITLLYHAQRLLDSPPELSTP
EKTHRLLGLTEGYMESLEKMRGPRMRAGKLSSVWMILYTTIAVLHSKDGFDKCDPDGA
DQVSITRVVAAADKVLELVSAVQNTGDTHLSSCDVISSVLFLHLARLMIQYTNRLRLR
VQDSALVSTLRAKTESFKRALIDQGERLVFAQVAAQMLENYHVGAEWKAGEWERADGG
DWRGV"
repeat_region 3881..3922
/rpt_type=tandem
/rpt_unit_seq="cgg"
/satellite="microsatellite"
misc_feature 4888..4909
/locus_tag="CNA00110"
/note="GC_rich"
gene complement(<5670..>6126)
/locus_tag="CNA00120"
mRNA complement(join(<5670..5918,5965..>6126))
/locus_tag="CNA00120"
/product="chaperone, putative"
CDS complement(join(5670..5918,5965..6126))
/locus_tag="CNA00120"
/note="GO_component: GO:0005758 - mitochondrial
intermembrane space;
GO_component: GO:0042719 - mitochondrial intermembrane
space protein transporter complex;
GO_function: GO:0003754 - chaperone activity;
GO_function: GO:0008565 - protein transporter activity;
GO_process: GO:0045039 - mitochondrial inner membrane
protein import"
/codon_start=1
/product="chaperone, putative"
/protein_id="AAW41258.1"
/db_xref="GI:57223214"
/translation="MDFSQFNGAEQAHMSKVIEKKQMQDFMRLYSGLVEKCFNACAQD
FTSKALTTNETTCVQNCTDKFLKHSERVGARFAEHNAGMLSPYGAASLMASQSKCRAP
DSNGLGVFCKWRRIKSTVVLYNHLACIKQMDNRF"
ORIGIN
1 caatacccac ccttcccact cccgccttca tgagttggcc gctcggcgtt gataaagcag
61 tcattaagag agaggttgtg tcttatcgaa ttctatattc catttcatta caccatatca
121 gaatcaattt tacactctga acggtcgggg tgagggagat gtgaatgggg ataggaatga
181 cggagaactg aacaaaacat accttccacg tagagcctgc tgctttatgc cacggccagc
241 gttcttcgat cgcttggtat atctatcaga aaaaagtgtt aggtagaggt atcgtgaatt
301 tggactatac ggaaagtaga gggagggtgg tgggttttaa aaaaagcaac agacgtactt
361 gggcaagagt catcatcttt cgaggagaag ctgcaatgac tagacgtatg gcttggacgt
421 gtgtcatgtc aggccgataa tctatgtctt tggatcagca tactggtaaa gagaaccccg
481 agagggagaa ggaaagatag agatggaaag attaaggact taccattccc atcccggtca
541 tacgcatacc tgaataactc tcctgcacct ttcgccaact cacccacttg ctcccatctc
601 ctccaaaccg cttcactcat cgtcatcggc ttcccatcac cctcttcgcc gccaccatca
661 tcatcaacat ccatatccac atcaacatca acgccgcacc tcccatgagc gccattccgg
721 aacctggaaa gatcagaatg gttaaactgg aaacctaggg ggttgggagc aaagacataa
781 ttggacacgg ggatacctaa cgcttggaca gtagggtctg agagacgggg cagagcgcgg
841 atgggtcgga cttgaacttt gagggatgga gatgggagtg gggatcgagg tcgggagggc
901 ggcgagggcg agggcgaagg agaggttctt accggacaga cccgaggctc atcatccgct
961 tttgctggga caccgtctgg atcaagttca tcgacccttt gctggtcctg atactttcgg
1021 tggtggtgac cttggccata accatcagct ctccgataat taggctgcac ctctctcatt
1081 gagattttat gtttcgcagc acggtattta ggactgataa tagtcgatgg gtccggggag
1141 atgggagaga ggggaggtcg gggagatgaa attgccaggc aagaagtggg agatacacct
1201 ggggtgagag tggccatggc ggtagagaca agaatggcgt gggagagcgt tgtaatggag
1261 acacatacat tagtacacac ccaggagctg ctccagccca tcggccatag cacacagcat
1321 acatcacatc gcatcccatt cgcaacataa gccgggagat gtattgctgg ttgttttgtt
1381 ttgatgcgcg atcgaccctt gatggaaaag agataaccca aaggacccca cccgctccag
1441 aagccaccaa acggggaacc caggttagag catagcttgg gaatccacgt ttagtgccta
1501 gcccatcgcg aatagtgacc acaaagggag gggaaaaggt ctgtgcgtgt gtatgttgat
1561 gtctcagaaa caaaaagctg acatcgtcaa cctcacaatc ctaaacatct cccgtcggct
1621 tcctacgcta tatgatttga tcccgccctg ctatgacgac cgagaatccc tcgtccttac
1681 ttcctctccc ttctgcatct tgccctctcg agacatgtaa gaaacccaaa cccccgacag
1741 cgccctaatc cattcttata ccacaaagca cttttgtgta tcccggctcc tctttcggaa
1801 acaatcccga tcaaccgtca acgttcctac tacgtgctct gcgcactgat tctggttaca
1861 gatattgatt aatcagcaat cgacccttta cctggcccta cgtgactgcc atatggttcc
1921 ctccttccgc cttgcgtcgt tccgcaactc tgaacaactg cgccgagcaa ctctgaacaa
1981 ctgcgccgag caactctgaa caactgcgcc gagtagcccg aggaatccgt gttccccatc
2041 tgccatcgga aggatcaaca aactgccccc ctctccccac aggcccccaa attgaacgaa
2101 caatccacat cctacacaaa ccacaaacaa tgtgtaacgc gttactcgta ctgcgtacct
2161 ttatgcgtta tacaagtatc atacacgcca cacacaatcc atcacctgaa cgccccttcc
2221 gagtcaagaa tcaagaatag ccagtgggcg caaaagaacc tttgcctcaa tctctcacag
2281 atctcgacat ccaaacatca agctaataag ctataaacac gttatgcatt acctcaatcc
2341 ccaattgtcg attcgactat acttgtcgtt tctttctcga cactcaccaa caaacgatct
2401 caagggtccg aaccattcat cctattctcg gctaatacgg tatgctcaaa cactcaaaac
2461 gataacctca accatcaaca atctttgatt tcacggttcg cgaggccgtg acggatggtc
2521 atgtatcaaa gggcaaatcg gggcaaggta tctgtcattt tcatctcatc tgcttaacag
2581 gtgagcttga gcatcatctc cagtagcttg ggtattgccg gttgctggcg tcgtcagccg
2641 tcgttgaact gttcaagagt ccagagttag agttacagat gtgccctaga cctctcttac
2701 cttggccctg actatgcaca catcttatct ttgatgcatg atccaacatc aacatggtcc
2761 cattctgtac ttttcttttg aacgtggtaa tccgataaat gtgaagaatt cagccaaaag
2821 ttctctaccc gaaaatccaa attacgtaaa ctctctatac cgcacccata agtccatctc
2881 cgttcccacg cctcggaggt ggatgttgta ttccgtcttg tcaacaaatc aacaaccata
2941 attaacaagc agcgaataaa ccatggcagg atatgacgcc cggtacggca acccgctgga
3001 ccccatgtct ggtggccggc catcgcctcc tgaaacctcg cagcaagatg cgtacgagta
3061 ctccaaacac ggcagcagct cgggttacct cgggcagcta ccgcttggtg ccgattctgc
3121 gcaagcggag actgcttctg ctttgcggac gctgtttggc gagggcgccg acgtgcaggc
3181 tttgcaagaa cctccgaatc agatcaatac cctggctgaa ggtgccgcgg tggcggagac
3241 gggcggtgta ctaggtggtg ataccacccg gtctgacaac gaagcgcttg ccatcgaccc
3301 atctctatcc gaacaagccg cgcctgcgcc caaggattcg acggaaacgc cagacgaccg
3361 atcccgctct ccctcgtccg gtaaccacca ccaccaccac ccggccgtca aacggaaagc
3421 cacgtcccgc gccggcatgc tcgcacgagg cggcgcgtgt gaattctgta aacgtcgaaa
3481 actgaaatgt tccgccgaat tgcctgcgtg cgcaaactgt gtcaagtcgg gcaaggaatg
3541 cgtttacgcg caaaagaagc agcggagtcg ggtcaaggtg ctggaggatc ggctgcaaga
3601 gctggagaaa cggttggagc aaggtcaggc cggggcggcg tcggcgtctg ggggcgacag
3661 cggcgcacac gctgcgagct cggtgtatac agccccgagt ttgggttcgg gcggcgggag
3721 cgagcttacc gttgagcaga cgcttgtcca caatgtcgat ccgagtctct taccgccgag
3781 cgagtatgac gaggccttta tcctgcacga tttcgacagt ttcgcggata tgcgcaagca
3841 ggagacgcag ctggagccgg accttatgac gctggctgat gcagcggcgg cggatacccc
3901 ggcggcggcg gcggcggaga cgaacgatcc atgggcaaag atgtctccag aggagattgt
3961 aaaggaaatt atcaaggttg ccactggcgg gaagggcgag ggcgagagga tcatatcgca
4021 tctgtacgtc tattttgtat ctacatctaa actttacttg acgagaagaa aaagagtgca
4081 aacgtacatg aactcgactg tcaacacgtg gcacccgctc gtcatcccgc cgatggatct
4141 cgtcagccgc gtgtcccgca cgacgccgga ccctatccac cccaccctcc tcctctcgct
4201 catccccgct ctgctccctc tatcgcctat ccaatcgctc cgccatcccg ccatcccgct
4261 cctcctcctc ccgcacgcgc gcgcccactc tgtgcaggcc atcacgcaat ccgacccccg
4321 cgtgctcgac accatcatcg ccggcgtgtc gcgtgcgtac agcttcttca acgaggcgaa
4381 gaacattgac gggtgggtcg attgcgtggc tgcgacgtcg ctcgtgcgcg ccgcgggctt
4441 gacaaagcag ggcggggtcg gggagaggtt cgtgccggag gatagggtgc cggcggaaag
4501 gctggcgaaa aggaggaggg aagctgggtt gagggcgttg atgcataaag gcgcgatcgt
4561 cccgccgcct gaatcgtggt accagtttgg ccagcgagtc aatcttttgc aagtggtcct
4621 tcttcatctc gtttccggaa attgcagagc tgaacttgac ggttttggtt agctggacct
4681 cttacatttg cgatcgggca gcggccatcg gctggggttg gccttcgtgt aagcgctccc
4741 gtcgcatact ttcgtttcga catgttttgc tgacgtacgc aaagcgtata atgacgagga
4801 tatcaccacg ccatggccta aagacgacta taaatccgtc caagcgcttt tggacgacac
4861 gaccatccac actttcctct ctcccctcgc gcccgcgccc gcgcccgcga cacccgactc
4921 tgacctgtgt gcgcaagcga aatccatcac actgctctac cacgcccagc gcctcctcga
4981 ttccccgcca gagctgtcca cccccgaaaa gacacaccgc ttacttggcc tgaccgaggg
5041 gtacatggag tctttagaaa agatgagagg gccgaggatg agggctggca agttgagttc
5101 tgtgtggatg attctgtaca cgtgagtgtt ggtcgggttt agtctatgct atactgaaaa
5161 tgggaaaagg acgattgcag tgttacactc gaaagacgga ttcgacaagt gcgacccgga
5221 cggcgctgac caagtgtcaa tcacgcgtgt cgtggcggct gccgacaaag tcctcgaact
5281 cgtctccgcc gtccaaaaca ctggcgatac ccatctctgt acgtccatct catcacgtct
5341 tgactaaaca ttaacacacg atcaagcctc gtgcgacgtc atctcctctg tccttttcct
5401 gcacctcgcc cgtctaatga tccaatacac aaaccgtctg cgcctccgcg tgcaagactc
5461 ggcgctcgtc agcacgctcc gggcgaaaac ggagtcgttc aagcgcgcgc tcatcgacca
5521 aggggaacga ctcgtgttcg cccaagtggc ggcgcagatg ctggagaact atcatgtggg
5581 cgcggaatgg aaggcggggg agtgggagag ggctgacggt ggggattggc ggggggttta
5641 gcgtatagtt tagggtatcg tttagggggt tagaatctgt tatccatctg tttgatacat
5701 gcaagatgat tgtaaagtac gactgttgat tttatcctac gccacttgca aaatactccc
5761 agaccgttac tgtccggcgc cctgcatttg ctctgcgacg ccattagcga tgcggcacca
5821 tacggggata acataccggc gttgtgctct gcaaacctcg cgccgacccg ttcagagtgc
5881 ttcagaaact tgtcggtgca gttctggacg caggtggtct tctcacacgg ttagttggtg
5941 gcatgcacga cacaggggac gcacctcgtt ggtggtgagg gctttactgg taaagtcctg
6001 ggcacaggcg ttgaagcact tttcgacgag gccggagtag agacgcataa agtcctgcat
6061 ctgcttcttc tcgatgacct tggacatgtg tgcctgctcg gcgccgttga attgtgaaaa
6121 gtccatggtg tgtgtgtgtg tggagtgtgg agagaggtgg agagatgaaa gaaagaggtg
6181 aaaaagagag tgtgtacgta a
//
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