File: interleaved.phylip

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python-cogent 2024.5.7a1%2Bdfsg-3
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     3   1758 I
human      ATGGGCCAAG GGGACGAGAG CGAGCGCATC GTGATCAACG TGGGCGGCAC
chimp      ?????????? ?????????? ?????????? ?????????? ??????????
mouse      ATGGGCCAAG GGGACGAGAG CGAGCGCATC GTGATCAACG TGGGCGGCAC

           GCGCCACCAG ACGTACCGCT CGACCCTGCG CACGCTGCCC GGCACGCGGC
           ?????????? ?????????? ?????????? ?????????? ??????????
           GCGCCACCAG ACGTACCGCT CGACGCTGCG CACGCTGCCC GGCACGCGGC

           TCGCCTGGCT GGCGGAGCCC GACGCCCACA GCCACTTCGA CTATGACCCG
           ?????????? ?????????? ?????????? ?????????? ??????????
           TTGCCTGGCT GGCAGAGCCG GACGCCCACA GCCACTTCGA CTATGACCCG

           CGTGCTGACG AGTTCTTCTT CGACCGCCAC CCCGGCGTCT TCGCGCACAT
           ?????????? ?????????? ?????????? ?????????? ??????????
           CGTGCCGACG AGTTCTTCTT CGACCGCCAC CCGGGCGTCT TCGCTCACAT

           CCTGAACTAC TACCGCACGG GCAAGCTGCA CTGCCCAGCC GACGTGTGCG
           ?????????? ??CCGCACGG GCAAGCTGCA CTGCCCAGCC GACGTGTGCG
           CCTGAACTAT TACCGCACCG GCAAGCTTCA CTGCCCGGCC GACGTGTGCG

           GGCCGCTCTA CGAGGAGGAG CTGGCCTTCT GGGGCATCGA CGAGACCGAC
           GGCCGCTCTA CGAGGAGGAG CTGGCCTTCT GGGGCATCGA CG???C?GAC
           GGCCGCTCTA CGAGGAGGAG CTGGCCTTCT GGGGCATCGA CGAGACGGAC

           GTGGAGCCCT GCTGCTGGAT GACGTACCGC CAGCACCGCG ACGCCGAGGA
           GTGGAGCCCT GCTGCTGGAT GACGTACCG? ?AGCACCGCG ACGCCGAGGA
           GTGGAGCCCT GCTGCTGGAT GACCTATCGC CAGCACCGAG ACGCTGAGGA

           GGCTCTGGAC AGCTTCGGCG GCGCTCCTCT GGACAACAGC GCCGACGACG
           GGCGCTGGAC AGCTTCGGCG GCGCTCCTCT GGACAACAGC GCCGACG???
           GGCGCTGGAC AGCTTTGGCG GTGCGCCCTT GGACAACAGC GCCGACGACG

           CGGACGCCGA CGGCCCTGGC GACTCGGGCG ACGGCGAGGA CGAGCTGGAG
           ?????????? ?????????? ??????GGCG ACGGCGAGGA CGAGCTGGAG
           CGGACGCCGA CGGCCCCGGC GACTCGGGCG ACGGCGAGGA CGAGCTGGAG

           ATGACCAAGC GCCTGGCGCT CAGTGACTCC CCGGATGGCC GGCCTGGCGG
           ATGACCAAGC GC??????CT CAGTGACTCC CCGGATGGCC GGCCTGGC??
           ATGACCAAGA GATTGGCACT CAGTGACTCC CCAGATGGCC GGCCTGGCGG

           CTTTTGGCGC CGCTGGCAGC CGCGCATCTG GGCGCTCTTC GAGGACCCGT
           CTTT?GGCGC C????????? ?????????? ?????????? ??????????
           CTTCTGGCGC CGCTGGCAAC CGCGCATCTG GGCGCTGTTC GAGGACCCCT

           ACTCGTCCCG CTACGCGCGG TATGTGGCCT TCGCTTCCCT CTTCTTCATC
           ?????????? ?????????? TATGTGGCCT TCGCTTCCCT CTTCTTCATC
           ACTCATCCCG CTACGCGCGG TATGTGGCCT TTGCCTCCCT CTTCTTCATC

           CTGGTCTCCA TCACCACCTT CTGCCTGGAG ACCCACGAGC GCTTCAACCC
           CTGGTCTCCA TCACCACCTT CTGCCTGGAG ACCCACGAGC GCTTCAACCC
           CTGGTCTCCA TCACAACCTT CTGTCTGGAG ACTCACGAGC GCTTCAACCC

           CATCGTGAAC AAGACGGAGA TCGAGAACGT TCGCAATGGC ACGCAAGTGC
           CATCGTGAAC AAGACGGAGA TTGAGAACGT TCGCAATGGC ACGCAAGTGC
           CATCGTGAAC AAGACCGAAA TCGAGAACGT TCGAAACGGC ACCCAAGTGC

           GCTACTACCG GGAGGCCGAG ACGGAGGCCT TCCTTACCTA CATCGAGGGC
           GCTACTACCG GGAGGCCGAG ACGGAGGCCT TCCTTACCTA CATCGAGGGC
           GGTACTACCG GGAAGCAGAG ACGGAGGCCT TCCTCACCTA CATCGAGGGC

           GTCTGTGTGG TCTGGTTCAC CTTCGAGTTC CTCATGCGTG TCATCTTCTG
           GTCTGTGTGG TCTGGTTCAC CTT???GTTC CTCATGCGT? TCATCTTCTG
           GTCTGCGTGG TCTGGTTCAC CTTCGAGTTC CTCATGCGTG TCGTCTTCTG

           CCCCAACAAG GTAGAGTTCA TCAAGAACTC GCTCAACATC ATTGACTTTG
           CCCCAACAAG GTAGAGTTCA TCAAGAACTC GCTCAACATC ATTGACTTTG
           CCCCAACAAG GTGGAATTCA TCAAGAACTC CCTCAATATC ATTGACTTTG

           TGGCCATCCT GCCCTTCTAC CTGGAGGTGG GGCTGAGCGG CCTGTCCTCC
           TGGCCATCCT GCCCTTCTAC CTGGAGGTGG GGCTGAGCGG CCTGTCCTCC
           TGGCCATTCT CCCCTTCTAC CTGGAGGTGG GCCTAAGCGG CCTGTCCTCA

           AAGGCAGCCA AGGACGTGCT GGGCTTCCTG CGCGTCGTCC GCTTCGTGCG
           AAGGCAGCCA AGGACGTGCT GGGCTTCCTG CGCGTCGTCC GCTTCGTGCG
           AAAGCCGCCA AGGACGTTCT GGGCTTCCTG CGCGTCGTCC GCTTCGTGCG

           CATCTTGCGC ATCTTTAAGC TGACCCGCCA CTTTGTGGGC CTGCGGGTCC
           CATCTTGCGC ATCTTTAAGC TGACCCGCCA CTTTGTGGGC CTGCGGGTCC
           CATCCTGCGC ATCTTCAAGC TGACCCGCCA CTTCGTGGGC CTGAGGGTCC

           TGGGCCACAC GCTCCGAGCC AGCACCAACG AGTTCCTGCT GCTCATCATC
           TGGGCCACAC GCTCCGAGCC AGCACCAACG AGTTCCTGCT GCTCATCATC
           TGGGCCACAC GCTCCGTGCC AGCACCAACG AGTTCCTGCT GCTTATCATC

           TTCCTGGCCT TGGGCGTGCT GATCTTCGCC ACCATGATCT ACTACGCCGA
           TTCCTGGCCT TGGGCGTGCT GATCTTCGCC ACCATGATCT ACTATGCCGA
           TTCCTGGCCC TGGGAGTGCT CATCTTTGCC ACCATGATCT ACTACGCCGA

           GAGGATAGGG GCACAGCCCA ATGACCCCAG CGCCAGTGAG CACACGCACT
           GAGGATAGGG GCACAGCCCA ATGACCCCAG CGCCAGTGAG CACACGCACT
           GAGGATAGGG GCACAGCCCA ATGACCCCAG CGCCAGCGAA CACACACACT

           TTAAGAACAT CCCCATCGGC TTCTGGTGGG CCGTGGTCAC CATGACGACC
           TTAAGAACAT CCCCATCGGC TTCTG?TGGG CCGTGGTCAC CATGACGACC
           TTAAAAACAT CCCCATCGGC TTCTGGTGGG CTGTGGTCAC CATGACGACA

           CTGGGCTATG GAGACATGTA CCCGCAGACG TGGTCCGGCA TGCTGGTGGG
           CTGGGCTATG GAGACATGTA CC???AGACG TGGTCCGGCA TGCTGGTGGG
           CTGGGCTATG GAGACATGTA TCCCCAGACG TGGTCTGGAA TGCTGGTGGG

           GGCTCTGTGT GCGCTGGCGG GCGTGCTCAC CATCGCCATG CCCGTGCCCG
           GGCTCTGTGT GCGCTGGCGG GCGTGCTCAC CATCGCCATG CCCGTGCCCG
           AGCCTTGTGT GCTCTGGCTG GTGTGCTGAC CATTGCCATG CCGGTGCCTG

           TCATCGTGAA CAATTTCGGG ATGTATTACT CCTTAGCCAT GGCTAAGCAG
           TCATCGTGAA CAATTTCGGG ATGTATTACT CCTTAGCCAT GGCTAAGCAG
           TCATCGTGAA CAATTTTGGG ATGTACTACT CTTTAGCCAT GGCTAAGCAG

           AAACTACCAA AGAAAAAAAA GAAGCATATT CCGCGGCCAC CGCAGCTGGG
           AAACTACCAA AGAAAAAAAA GAAGCATATT CCGCGGCCAC CGCAGCTGGG
           AAACTACCAA AGAAAAAAAA GAAGCATATT CCGCGGCCAC CACAGCTGGG

           ATCTCCCAAT TATTGTAAAT CTGTCGTAAA CTCTCCACAC CACAGTACTC
           ATCTCCCAAT TATTGTAAAT CTGTCGTAAA CTCTCCACAC CACAGTACTC
           ATCTCCCAAT TATTGTAAAT CTGTCGTAAA CTCTCCACAC CACAGTACTC

           AGAGTGACAC ATGTCCGCTG GCCCAGGAAG AAATTTTAGA AATTAACAGA
           AGAGTGACAC ATGTCCGCTG GCCCAGGAAG AAATTTTAGA AATTAACAGA
           AGAGTGACAC ATGCCCGCTG GCCCAGGAAG AAATTTTAGA AATTAACAGA

           GCAGATTCCA AACTGAATGG GGAGGTGGCG AAGGCCGCGC TGGCGAACGA
           GCAGATTCCA AACTGAATGG GGAGGTGGCG AAGGCCG??? TGGCGAAC??
           GCAGATTCCA AACTGAATGG GGAGGTGGCG AAGGCCGCGC TGGCGAACGA

           AGACTGCCCC CACATAGACC AGGCCCTCAC TCCCGATGAG GGCCTGCCCT
           AGA??GCCCC CACATAGACC AGGCC???AC TCCCGATGAG GGCCTGCCCT
           AGACTGCCCC CACATAGACC AGGCCCTCAC TCCCGATGAG GGCCTGCCCT

           TTACGCGCTC GGGCACCCGC GAGAGATACG GACCCTGCTT CCTCTTATCA
           TTACGCG??C GGGCAC??GC GAGAGATACG GACCCTGCTT CCTCTTATCA
           TTACCCGCTC GGGCACCCGC GAGAGATACG GACCCTGCTT CCTCTTATCA

           ACCGGGGAGT ACGCGTGCCC ACCTGGTGGA GGAATGAGAA AGGATCTTTG
           ACCGGGGAGT ACGCG????? ?????????? ?????????? ???ATCTTTG
           ACCGGGGAGT ACGCGTGCCC ACCTGGTGGA GGAATGAGAA AGGATCTTTG

           CAAAGAAAGC CCTGTCATTG CTAAGTATAT GCCGACAGAG GCTGTGAGAG
           CAAAGAAAGC CCTGTCATTG CTAAGTATAT GCCGACAGAG GCTGTGAGAG
           CAAAGAAAGC CCTGTCATTG CTAAGTATAT GCCGACAGAG GCTGTGAGAG

           TGACTTGA
           TGACTTGA
           TGACTTGA