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#!/usr/bin/env python
"""Unit tests for parser support libraries dealing with records.
"""
from unittest import TestCase
from cogent3.parse.record import (
DelimitedSplitter,
FieldError,
FieldMorpher,
FieldWrapper,
GenericRecord,
Grouper,
LineOrientedConstructor,
MappedRecord,
StrictFieldWrapper,
TypeSetter,
bool_setter,
dict_adder,
int_setter,
list_adder,
list_extender,
raise_unknown_field,
string_and_strip,
)
class recordsTests(TestCase):
"""Tests of top-level functionality in records."""
def test_string_and_strip(self):
"""string_and_strip should convert all items to strings and strip them"""
self.assertEqual(string_and_strip(), [])
self.assertEqual(string_and_strip("\t", " ", "\n\t"), ["", "", ""])
self.assertEqual(
string_and_strip("\ta\tb", 3, " cde e", None),
["a\tb", "3", "cde e", "None"],
)
def test_raise_unknown_field(self):
"""raise_unknown_field should always raise FieldError"""
self.assertRaises(FieldError, raise_unknown_field, "xyz", 123)
class GrouperTests(TestCase):
"""Tests of the Grouper class."""
def test_call(self):
"""Grouper should return lists containing correct number of groups"""
empty = []
s3 = "abc"
s10 = list(range(10))
g1 = Grouper(1)
g2 = Grouper(2)
g5 = Grouper(5)
self.assertEqual(list(g1(empty)), [])
self.assertEqual(list(g2(empty)), [])
self.assertEqual(list(g5(empty)), [])
self.assertEqual(list(g1(s3)), [["a"], ["b"], ["c"]])
self.assertEqual(list(g2(s3)), [["a", "b"], ["c"]])
self.assertEqual(list(g5(s3)), [["a", "b", "c"]])
self.assertEqual(list(g1(s10)), [[i] for i in range(10)])
self.assertEqual(list(g2(s10)), [[0, 1], [2, 3], [4, 5], [6, 7], [8, 9]])
self.assertEqual(list(g5(s10)), [[0, 1, 2, 3, 4], [5, 6, 7, 8, 9]])
def test_call_bad(self):
"""Grouper call should raise ValueError if NumItems is not an int"""
g_none = Grouper(None)
g_neg = Grouper(-1)
g_zero = Grouper(0)
g_alpha = Grouper("abc")
for g in (g_none, g_neg, g_zero, g_alpha):
iterator = g("abcd")
self.assertRaises(ValueError, list, iterator)
class DelimitedSplitterTests(TestCase):
"""Tests of the DelimitedSplitter factory function."""
def test_parsers(self):
"""DelimitedSplitter should return function with correct behavior"""
empty = DelimitedSplitter()
space = DelimitedSplitter(None)
semicolon = DelimitedSplitter(";")
twosplits = DelimitedSplitter(";", 2)
allsplits = DelimitedSplitter(";", None)
lastone = DelimitedSplitter(";", -1)
lasttwo = DelimitedSplitter(";", -2)
self.assertEqual(empty("a b c"), ["a", "b c"])
self.assertEqual(empty("abc"), ["abc"])
self.assertEqual(empty(" "), [])
self.assertEqual(empty("a b c"), space("a b c"))
self.assertEqual(semicolon(" a ; b ; c d"), ["a", "b ; c d"])
self.assertEqual(twosplits(" a ; b ; c d"), ["a", "b", "c d"])
self.assertEqual(
allsplits(" a ; b ; c;;d;e ;"), ["a", "b", "c", "", "d", "e", ""]
)
self.assertEqual(lastone(" a ; b ; c;;d;e ;"), ["a ; b ; c;;d;e", ""])
self.assertEqual(lasttwo(" a ; b ; c;;d;e ;"), ["a ; b ; c;;d", "e", ""])
self.assertEqual(lasttwo(""), [])
self.assertEqual(lasttwo("x"), ["x"])
self.assertEqual(lasttwo("x;"), ["x", ""])
class GenericRecordTests(TestCase):
"""Tests of the GenericRecord class"""
class gr(GenericRecord):
Required = {"a": "x", "b": [], "c": {}}
def test_init(self):
"""GenericRecord init should work OK empty or with data"""
self.assertEqual(GenericRecord(), {})
self.assertEqual(GenericRecord({"a": 1}), {"a": 1})
assert isinstance(GenericRecord(), GenericRecord)
def test_init_subclass(self):
"""GenericRecord subclass init should include required data"""
self.assertEqual(self.gr(), {"a": "x", "b": [], "c": {}})
self.assertEqual(self.gr({"a": []}), {"a": [], "b": [], "c": {}})
assert isinstance(self.gr(), self.gr)
assert isinstance(self.gr(), GenericRecord)
def test_delitem(self):
"""GenericRecord delitem should fail if item required"""
g = self.gr()
g["d"] = 3
self.assertEqual(g, {"a": "x", "b": [], "c": {}, "d": 3})
del g["d"]
self.assertEqual(g, {"a": "x", "b": [], "c": {}})
self.assertRaises(AttributeError, g.__delitem__, "a")
g["c"][3] = 4
self.assertEqual(g["c"], {3: 4})
def test_copy(self):
"""GenericRecord copy should include attributes and set correct class"""
g = self.gr()
g["a"] = "abc"
g.X = "y"
h = g.copy()
self.assertEqual(g, h)
assert isinstance(h, self.gr)
self.assertEqual(h.X, "y")
self.assertEqual(h, {"a": "abc", "b": [], "c": {}})
class MappedRecordTests(TestCase):
"""Tests of the MappedRecord class"""
def setUp(self):
"""Define a few standard MappedRecords"""
self.empty = MappedRecord()
self.single = MappedRecord({"a": 3})
self.several = MappedRecord(a=4, b=5, c="a", d=[1, 2, 3])
def test_init_empty(self):
"""MappedRecord empty init should work OK"""
g = MappedRecord()
self.assertEqual(g, {})
def test_init_data(self):
"""MappedRecord should work like normal dict init"""
exp = {"a": 3, "b": 4}
self.assertEqual(MappedRecord({"a": 3, "b": 4}), exp)
self.assertEqual(MappedRecord(a=3, b=4), exp)
self.assertEqual(MappedRecord([["a", 3], ["b", 4]]), exp)
def test_init_subclass(self):
"""MappedRecord subclasses should behave as expected"""
class rec(MappedRecord):
Required = {"a": {}, "b": "xyz", "c": 3}
Aliases = {"B": "b"}
r = rec()
self.assertEqual(r, {"a": {}, "b": "xyz", "c": 3})
# test that subclassing is correct
s = r.copy()
assert isinstance(s, rec)
# test Aliases
s.B = 0
self.assertEqual(s, {"a": {}, "b": 0, "c": 3})
# test Required
try:
del s.B
except AttributeError:
pass
else:
raise AssertionError("Subclass failed to catch requirement")
def test_getattr(self):
"""MappedRecord getattr should look in dict after real attrs"""
s = self.several
self.assertEqual(s.Aliases, {})
self.assertEqual(s.a, 4)
self.assertEqual(s.d, [1, 2, 3])
for key in s:
self.assertEqual(getattr(s, key), s[key])
assert "xyz" not in s
self.assertEqual(s.xyz, None)
self.assertEqual(s["xyz"], None)
s.Aliases = {"xyz": "a"}
self.assertEqual(s["xyz"], 4)
def test_setattr(self):
"""MappedRecord setattr should add to dict"""
s = self.single
# check that we haven't screwed up normal attribute setting
assert "Aliases" not in s
s.Aliases = {"x": "y"}
assert "Aliases" not in s
self.assertEqual(s.Aliases, {"x": "y"})
s.x = 5
assert "x" in s
self.assertEqual(s["x"], 5)
self.assertEqual(s.x, 5)
s.Aliases = {"XYZ": "b"}
s.XYZ = 3
self.assertEqual(s.b, 3)
def test_delattr(self):
"""MappedRecord delattr should work for 'normal' and other attributes"""
s = self.single
s.__dict__["x"] = "y"
assert "x" not in s
self.assertEqual(s.x, "y")
del s.x
self.assertEqual(s.x, None)
self.assertEqual(s, {"a": 3})
# try it for an internal attribute: check it doesn't delete anything
# else
s.b = 4
self.assertEqual(s, {"a": 3, "b": 4})
del s.a
self.assertEqual(s, {"b": 4})
del s.abc
self.assertEqual(s, {"b": 4})
s.Required = {"b": True}
try:
del s.b
except AttributeError:
pass
else:
raise AssertionError("Allowed deletion of required attribute" "")
s.a = 3
self.assertEqual(s.a, 3)
s.Aliases = {"xyz": "a"}
del s.xyz
self.assertEqual(s.a, None)
def test_getitem(self):
"""MappedRecord getitem should work only for keys, not attributes"""
s = self.single
self.assertEqual(s["Required"], None)
self.assertEqual(s["a"], 3)
self.assertEqual(s["xyz"], None)
self.assertEqual(s[list("abc")], None)
s.Aliases = {"xyz": "a"}
self.assertEqual(s["xyz"], 3)
def test_setitem(self):
"""MappedRecord setitem should work only for keys, not attributes"""
s = self.single
s["Required"] = None
self.assertEqual(s, {"a": 3, "Required": None})
self.assertEqual(s.Required, {})
self.assertNotEqual(s.Required, None)
s["c"] = 5
self.assertEqual(s, {"a": 3, "c": 5, "Required": None})
# still not allowed unhashable objects as keys
self.assertRaises(TypeError, s.__setitem__, list(range(3)))
s.Aliases = {"C": "c"}
s["C"] = 3
self.assertEqual(s, {"a": 3, "c": 3, "Required": None})
def test_delitem(self):
"""MappedRecord delitem should only work for keys, not attributes"""
s = self.single
del s["Required"]
self.assertEqual(s.Required, {})
s.Required = {"a": True}
try:
del s["a"]
except AttributeError:
pass
else:
raise AssertionError("Allowed deletion of required item")
s.Aliases = {"B": "b"}
s.b = 5
self.assertEqual(s.b, 5)
del s.B
self.assertEqual(s.b, None)
def test_contains(self):
"""MappedRecord contains should use aliases, but not apply to attrs"""
s = self.single
assert "a" in s
assert "b" not in s
s.b = 5
assert "b" in s
assert "Required" not in s
assert "A" not in s
s.Aliases = {"A": "a"}
assert "A" in s
def test_get(self):
"""MappedRecord get should be typesafe against unhashables"""
s = self.single
self.assertEqual(s.get(1, 6), 6)
self.assertEqual(s.get("a", "xyz"), 3)
self.assertEqual(s.get("ABC", "xyz"), "xyz")
s.Aliases = {"ABC": "a"}
self.assertEqual(s.get("ABC", "xyz"), 3)
self.assertEqual(s.get([1, 2, 3], "x"), "x")
def test_setdefault(self):
"""MappedRecord setdefault should not be typesafe against unhashables"""
s = self.single
x = s.setdefault("X", "xyz")
self.assertEqual(x, "xyz")
self.assertEqual(s, {"a": 3, "X": "xyz"})
self.assertRaises(TypeError, s.setdefault, ["a", "b"], "xyz")
def test_update(self):
"""MappedRecord update should transparently convert keys"""
s = self.single
s.b = 999
s.Aliases = {"XYZ": "x", "ABC": "a"}
d = {"ABC": 111, "CVB": 222}
s.update(d)
self.assertEqual(s, {"a": 111, "b": 999, "CVB": 222})
def test_copy(self):
"""MappedRecord copy should return correct class"""
s = self.single
t = s.copy()
assert isinstance(t, MappedRecord)
s.Aliases = {"XYZ": "x"}
u = s.copy()
u.Aliases["ABC"] = "a"
self.assertEqual(s.Aliases, {"XYZ": "x"})
self.assertEqual(t.Aliases, {})
self.assertEqual(u.Aliases, {"XYZ": "x", "ABC": "a"})
def test_subclass(self):
"""MappedRecord subclassing should work correctly"""
class ret3(MappedRecord):
DefaultValue = 3
ClassData = "xyz"
x = ret3({"ABC": 777, "DEF": "999"})
self.assertEqual(x.ZZZ, 3)
self.assertEqual(x.ABC, 777)
self.assertEqual(x.DEF, "999")
self.assertEqual(x.ClassData, "xyz")
x.ZZZ = 6
self.assertEqual(x.ZZZ, 6)
self.assertEqual(x.ZZ, 3)
x.ClassData = "qwe"
self.assertEqual(x.ClassData, "qwe")
self.assertEqual(ret3.ClassData, "xyz")
def test_DefaultValue(self):
"""MappedRecord DefaultValue should give new copy when requested"""
class m(MappedRecord):
DefaultValue = []
a = m()
b = m()
assert a["abc"] is not b["abc"]
assert a["abc"] == b["abc"]
class dummy(object):
"""Do-nothing class whose attributes can be freely abused."""
pass
class TypeSetterTests(TestCase):
"""Tests of the TypeSetter class"""
def test_setter_empty(self):
"""TypeSetter should set attrs to vals on empty init"""
d = dummy()
ident = TypeSetter()
ident(d, "x", "abc")
self.assertEqual(d.x, "abc")
ident(d, "y", 3)
self.assertEqual(d.y, 3)
ident(d, "x", 2)
self.assertEqual(d.x, 2)
def test_setter_typed(self):
"""TypeSetter should set attrs to constructor(val) when specified"""
d = dummy()
i = TypeSetter(int)
i(d, "zz", 3)
self.assertEqual(d.zz, 3)
i(d, "xx", "456")
self.assertEqual(d.xx, 456)
class TypeSetterLikeTests(TestCase):
"""Tests of the functions that behave similarly to TypeSetter products"""
def test_list_adder(self):
"""list_adder should add items to list, creating if necessary"""
d = dummy()
list_adder(d, "x", 3)
self.assertEqual(d.x, [3])
list_adder(d, "x", "abc")
self.assertEqual(d.x, [3, "abc"])
list_adder(d, "y", [2, 3])
self.assertEqual(d.x, [3, "abc"])
self.assertEqual(d.y, [[2, 3]])
def test_list_extender(self):
"""list_adder should add items to list, creating if necessary"""
d = dummy()
list_extender(d, "x", "345")
self.assertEqual(d.x, ["3", "4", "5"])
list_extender(d, "x", "abc")
self.assertEqual(d.x, ["3", "4", "5", "a", "b", "c"])
list_extender(d, "y", [2, 3])
self.assertEqual(d.x, ["3", "4", "5", "a", "b", "c"])
self.assertEqual(d.y, [2, 3])
list_extender(d, "y", None)
self.assertEqual(d.y, [2, 3, None])
def test_dict_adder(self):
"""dict_adder should add items to dict, creating if necessary"""
d = dummy()
dict_adder(d, "x", 3)
self.assertEqual(d.x, {3: None})
dict_adder(d, "x", "ab")
self.assertEqual(d.x, {3: None, "a": "b"})
dict_adder(d, "x", ["a", 0])
self.assertEqual(d.x, {3: None, "a": 0})
dict_adder(d, "y", None)
self.assertEqual(d.x, {3: None, "a": 0})
self.assertEqual(d.y, {None: None})
class LineOrientedConstructorTests(TestCase):
"""Tests of the LineOrientedConstructor class"""
def test_init_empty(self):
"""LOC empty init should succeed with expected defaults"""
l = LineOrientedConstructor()
self.assertEqual(l.Lines, [])
self.assertEqual(l.LabelSplitter(" ab cd "), ["ab", "cd"])
self.assertEqual(l.FieldMap, {})
self.assertEqual(l.Constructor, MappedRecord)
self.assertEqual(l.Strict, False)
def test_empty_LOC(self):
"""LOC empty should fail if strict, fill fields if not strict"""
data = ["abc def", "3 n", "\t abc \txyz\n\n", "fgh "]
l = LineOrientedConstructor()
result = l()
self.assertEqual(result, {})
result = l([])
self.assertEqual(result, {})
result = l([" ", "\n\t "])
self.assertEqual(result, {})
result = l(data)
self.assertEqual(result, {"abc": "xyz", "3": "n", "fgh": None})
def test_full_LOC(self):
"""LOC should behave as expected when initialized with rich data"""
data = [
"abc\t def",
" 3 \t n",
" abc \txyz\n\n",
"x\t5",
"fgh ",
"x\t3 ",
]
class rec(MappedRecord):
Required = {"abc": []}
maps = {"abc": list_adder, "x": int_setter, "fgh": bool_setter}
label_splitter = DelimitedSplitter("\t")
constructor = rec
strict = True
loc_bad = LineOrientedConstructor(
data, label_splitter, maps, constructor, strict
)
self.assertRaises(FieldError, loc_bad)
strict = False
loc_good = LineOrientedConstructor(
data, label_splitter, maps, constructor, strict
)
result = loc_good()
assert isinstance(result, rec)
self.assertEqual(
result, {"abc": ["def", "xyz"], "3": "n", "fgh": False, "x": 3}
)
class fake_dict(dict):
"""Test that constructors return the correct subclass"""
pass
class FieldWrapperTests(TestCase):
"""Tests of the FieldWrapper factory function"""
def test_default(self):
"""Default FieldWrapper should wrap fields and labels"""
fields = list("abcde")
f = FieldWrapper(fields)
self.assertEqual(f(""), {})
self.assertEqual(f("xy za "), {"a": "xy", "b": "za"})
self.assertEqual(
f("1 2\t\t 3 \n4 5 6"),
{"a": "1", "b": "2", "c": "3", "d": "4", "e": "5"},
)
def test_splitter(self):
"""FieldWrapper with splitter should use that splitter"""
fields = ["label", "count"]
splitter = DelimitedSplitter(":", -1)
f = FieldWrapper(fields, splitter)
self.assertEqual(f(""), {})
self.assertEqual(f("nknasd:"), {"label": "nknasd", "count": ""})
self.assertEqual(f("n:k:n:a:sd "), {"label": "n:k:n:a", "count": "sd"})
def test_constructor(self):
"""FieldWrapper with constructor should use that constructor"""
fields = list("abc")
f = FieldWrapper(fields, constructor=fake_dict)
self.assertEqual(f("x y"), {"a": "x", "b": "y"})
assert isinstance(f("x y"), fake_dict)
class StrictFieldWrapperTests(TestCase):
"""Tests of the StrictFieldWrapper factory function"""
def test_default(self):
"""Default StrictFieldWrapper should wrap fields if count correct"""
fields = list("abcde")
f = StrictFieldWrapper(fields)
self.assertEqual(
f("1 2\t\t 3 \n4 5 "), {"a": "1", "b": "2", "c": "3", "d": "4", "e": "5"}
)
self.assertRaises(FieldError, f, "")
self.assertRaises(FieldError, f, "xy za ")
def test_splitter(self):
"""StrictFieldWrapper with splitter should use that splitter"""
fields = ["label", "count"]
splitter = DelimitedSplitter(":", -1)
f = StrictFieldWrapper(fields, splitter)
self.assertEqual(f("n:k:n:a:sd "), {"label": "n:k:n:a", "count": "sd"})
self.assertEqual(f("nknasd:"), {"label": "nknasd", "count": ""})
self.assertRaises(FieldError, f, "")
def test_constructor(self):
"""StrictFieldWrapper with constructor should use that constructor"""
fields = list("ab")
f = StrictFieldWrapper(fields, constructor=fake_dict)
self.assertEqual(f("x y"), {"a": "x", "b": "y"})
assert isinstance(f("x y"), fake_dict)
class FieldMorpherTests(TestCase):
"""Tests of the FieldMorpher class."""
def test_default(self):
"""FieldMorpher default should use correct constructors"""
fm = FieldMorpher({"a": int, "b": str})
self.assertEqual(fm({"a": "3", "b": 456}), {"a": 3, "b": "456"})
def test_default_error(self):
"""FieldMorpher default should raise FieldError on unknown fields"""
fm = FieldMorpher({"a": int, "b": str})
self.assertRaises(FieldError, fm, {"a": "3", "b": 456, "c": "4"})
def test_altered_default(self):
"""FieldMorpher with default set should apply it"""
func = lambda x, y: (str(x), float(y) - 0.5)
fm = FieldMorpher({"3": str, 4: int}, func)
# check that recognized values aren't tampered with
self.assertEqual(fm({3: 3, 4: "4"}), {"3": "3", 4: 4})
# check that unrecognized values get the appropriate conversion
self.assertEqual(fm({3: 3, 5: "5"}), {"3": "3", "5": 4.5})
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