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Source: python-cooler
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
dh-sequence-python3,
pybuild-plugin-pyproject,
python3-all,
python3-hatchling,
python3-hatch-vcs,
python3-simplejson <!nocheck>,
python3-pandas (>= 2.1) <!nocheck>,
python3-scipy (>= 1.10~) <!nocheck>,
python3-h5py <!nocheck>,
python3-asciitree <!nocheck>,
python3-multiprocess <!nocheck>,
python3-click <!nocheck>,
python3-cytoolz <!nocheck>,
python3-pytest <!nocheck>,
python3-biopython <!nocheck>,
python3-pyfaidx <!nocheck>,
python3-pysam <!nocheck>,
python3-pairix <!nocheck>,
python3-yaml <!nocheck>,
python3-dask <!nocheck>,
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/python-cooler
Vcs-Git: https://salsa.debian.org/med-team/python-cooler.git
Homepage: https://github.com/mirnylab/cooler
Rules-Requires-Root: no
Package: python3-cooler
Architecture: any-amd64 arm64 loong64 mips64el ppc64el ia64 ppc64 riscv64 sparc64 alpha
Section: python
Depends: ${python3:Depends},
${misc:Depends},
python3-numpy,
python3-scipy (>= 1.10~),
python3-pandas(>= 2.1),
python3-h5py,
python3-click,
python3-pysam,
python3-cytoolz,
python3-multiprocess,
python3-biopython,
python3-pyfaidx,
python3-pairix,
python3-asciitree,
python3-yaml,
python3-simplejson
Recommends: python3-dask
Suggests: python3-pip
Description: library for a sparse, compressed, binary persistent storage
Cooler is a support library for a sparse, compressed, binary persistent
storage format, also called cooler, used to store genomic interaction
data, such as Hi-C contact matrices.
.
The cooler file format is an implementation of a genomic matrix data
model using HDF5 as the container format. The cooler package includes a
suite of command line tools and a Python API to facilitate creating,
querying and manipulating cooler files.
Package: python3-cooler-examples
Architecture: all
Section: python
Depends: ${python3:Depends},
${misc:Depends},
Enhances: python3-cooler
Multi-Arch: foreign
Description: library for a sparse, compressed, binary persistent storage (examples)
Cooler is a support library for a sparse, compressed, binary persistent
storage format, also called cooler, used to store genomic interaction
data, such as Hi-C contact matrices.
.
The cooler file format is an implementation of a genomic matrix data
model using HDF5 as the container format. The cooler package includes a
suite of command line tools and a Python API to facilitate creating,
querying and manipulating cooler files.
.
This package contains some example data.
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