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import logging
import os
import shutil
import tempfile
import unittest
import numpy
from astropy.io import fits
import cpl
cpl.Recipe.memory_mode = 0
recipe_name = 'rtest'
raw_tag = 'RRRECIPE_DOCATG_RAW'
rtest_esorexrc = '''# example RC file
iiinstrument.rtest.string_option = more
iiinstrument.rtest.bool_option = False
iiinstrument.rtest.float_option = 1.125
iiinstrument.rtest.int_option = -2
iiinstrument.rtest.enum_option = second
iiinstrument.rtest.range_option = 0.5
iiinstrument.rtest.dotted.opt = 1
'''
def create_recipe(name, builddir):
var = {
'CC': os.getenv("CC", "gcc"),
'CPPFLAGS': os.getenv("CPPFLAGS", ""),
'CFLAGS': os.getenv("CFLAGS", ""),
'LDFLAGS': os.getenv("LDFLAGS", ""),
'LIBS': "-lcplcore -lcpldfs",
'cname': os.path.join(os.path.dirname(__file__), name + ".c"),
'oname': os.path.join(builddir, name + '.o'),
'soname': os.path.join(builddir, name + '.so'),
}
os.system("{CC} {CPPFLAGS} {CFLAGS} -fPIC -c -o {oname} {cname}".format(**var))
os.system("{CC} {LDFLAGS} -shared -o {soname} {oname} {LIBS}".format(**var))
os.remove(var['oname'])
class CplTestCase(unittest.TestCase):
def setUp(self):
unittest.TestCase.setUp(self)
self.temp_dir = tempfile.mkdtemp()
create_recipe(recipe_name, self.temp_dir)
cpl.Recipe.path = self.temp_dir
def tearDown(self):
unittest.TestCase.tearDown(self)
shutil.rmtree(self.temp_dir)
class RecipeTestCase(CplTestCase):
def setUp(self):
CplTestCase.setUp(self)
self.recipe = cpl.Recipe(recipe_name)
self.recipe.temp_dir = self.temp_dir
self.recipe.tag = raw_tag
self.image_size = (16, 16)
self.raw_frame = fits.HDUList([
fits.PrimaryHDU(numpy.random.randint(0, 65001,
self.image_size))])
self.raw_frame[0].header['HIERARCH ESO DET DIT'] = 0.0
self.raw_frame[0].header['HIERARCH ESO PRO CATG'] = raw_tag
class RecipeStatic(CplTestCase):
def test_list(self):
'''List available recipes'''
l = cpl.Recipe.list()
self.assertTrue(isinstance(l, list))
self.assertEqual(len(l), 1)
self.assertEqual(l[0], (recipe_name, ['0.0.1']))
def test_create_recipe(self):
'''Create a recipe specified by its name'''
recipe = cpl.Recipe(recipe_name)
self.assertTrue(isinstance(recipe, cpl.Recipe))
def test_create_recipe_version(self):
'''Create a recipe specified by its name and version'''
recipe = cpl.Recipe(recipe_name, version = '0.0.1')
self.assertTrue(isinstance(recipe, cpl.Recipe))
def test_create_recipe_wrong_name(self):
'''Create a recipe specified by a wrong name'''
self.assertRaises(IOError, cpl.Recipe, 'wrongname')
def test_create_recipe_wrong_version(self):
'''Create a recipe specified by a wrong version'''
self.assertRaises(IOError, cpl.Recipe, recipe_name, version='0.0.10')
def test_create_recipe_filename(self):
'''Create a recipe specified by a the name and the filename'''
recipe = cpl.Recipe(recipe_name,
filename = os.path.join(self.temp_dir, 'rtest.so'))
self.assertTrue(isinstance(recipe, cpl.Recipe))
def test_create_recipe_wrong_filename(self):
'''Create a recipe specified by a wrong filename'''
self.assertRaises(IOError, cpl.Recipe, recipe_name,
filename = os.path.join(
os.path.dirname(os.path.abspath(__file__)),
'iiinstrumentp', 'recipes', '.libs', 'rtest.o'))
class RecipeCommon(RecipeTestCase):
def test_name(self):
'''Recipe name'''
self.assertEqual(self.recipe.__name__, recipe_name)
def test_author(self):
'''Author attribute'''
self.assertEqual(self.recipe.__author__, 'Ole Streicher')
def test_email(self):
'''Author attribute'''
self.assertEqual(self.recipe.__email__, 'python-cpl@liska.ath.cx')
def test_description(self):
'''Synopsis and description'''
self.assertTrue(isinstance(self.recipe.description[0], str))
self.assertTrue(len(self.recipe.description[0]) > 0)
self.assertTrue(isinstance(self.recipe.description[1], str))
self.assertTrue(len(self.recipe.description[1]) > 0)
def test_copyright(self):
'''Copyright'''
self.assertTrue(isinstance(self.recipe.__copyright__, str))
self.assertTrue(len(self.recipe.__copyright__) > 0)
class RecipeParams(RecipeTestCase):
def test_string_parameter(self):
'''String parameter'''
self.assertTrue(isinstance(self.recipe.param.stropt, cpl.Parameter))
self.assertEqual(self.recipe.param.stropt.name, 'stropt')
self.assertEqual(self.recipe.param.stropt.context,
'iiinstrument.rtest')
self.assertEqual(self.recipe.param.stropt.default, None)
self.assertEqual(self.recipe.param.stropt.value, None)
self.assertEqual(self.recipe.param.stropt.range, None)
self.assertEqual(self.recipe.param.stropt.sequence, None)
self.recipe.param.stropt = 'more'
self.assertEqual(self.recipe.param.stropt.value, 'more')
del self.recipe.param.stropt
self.assertEqual(self.recipe.param.stropt.value, None)
def test_boolean_parameter(self):
'''Boolean parameter'''
self.assertTrue(isinstance(self.recipe.param.boolopt, cpl.Parameter))
self.assertEqual(self.recipe.param.boolopt.name, 'boolopt')
self.assertEqual(self.recipe.param.boolopt.default, True)
self.assertEqual(self.recipe.param.boolopt.value, None)
self.recipe.param.boolopt = False
self.assertEqual(self.recipe.param.boolopt.value, False)
del self.recipe.param.boolopt
self.assertEqual(self.recipe.param.boolopt.value, None)
def test_float_parameter(self):
'''Float parameter'''
self.assertTrue(isinstance(self.recipe.param.floatopt, cpl.Parameter))
self.assertEqual(self.recipe.param.floatopt.name, 'floatopt')
self.assertEqual(self.recipe.param.floatopt.default, 0.1)
self.assertEqual(self.recipe.param.floatopt.value, None)
self.recipe.param.floatopt = 1.1
self.assertEqual(self.recipe.param.floatopt.value, 1.1)
del self.recipe.param.floatopt
self.assertEqual(self.recipe.param.floatopt.value, None)
def test_int_parameter(self):
'''Integer parameter'''
self.assertTrue(isinstance(self.recipe.param.intopt, cpl.Parameter))
self.assertEqual(self.recipe.param.intopt.name, 'intopt')
self.assertEqual(self.recipe.param.intopt.default, 2)
self.assertEqual(self.recipe.param.intopt.value, None)
self.recipe.param.intopt = -1
self.assertEqual(self.recipe.param.intopt.value, -1)
del self.recipe.param.intopt
self.assertEqual(self.recipe.param.intopt.value, None)
def test_enum_parameter(self):
'''Enumeration (string) parameter'''
self.assertTrue(isinstance(self.recipe.param.enumopt, cpl.Parameter))
self.assertEqual(self.recipe.param.enumopt.name, 'enumopt')
self.assertEqual(self.recipe.param.enumopt.default, 'first')
self.assertEqual(self.recipe.param.enumopt.value, None)
self.recipe.param.enumopt = 'second'
self.assertEqual(self.recipe.param.enumopt.value, 'second')
del self.recipe.param.enumopt
self.assertEqual(self.recipe.param.enumopt.value, None)
def setenumoptinvalid():
self.recipe.param.enumopt = 'invalid'
self.assertRaises(ValueError, setenumoptinvalid)
def test_range_parameter(self):
'''Range (float) parameter'''
self.assertTrue(isinstance(self.recipe.param.rangeopt, cpl.Parameter))
self.assertEqual(self.recipe.param.rangeopt.name, 'rangeopt')
self.assertEqual(self.recipe.param.rangeopt.default, 0.1)
self.assertEqual(self.recipe.param.rangeopt.value, None)
self.recipe.param.rangeopt = 0.4
self.assertEqual(self.recipe.param.rangeopt.value, 0.4)
del self.recipe.param.rangeopt
self.assertEqual(self.recipe.param.rangeopt.value, None)
def setrangeoptinvalid():
self.recipe.param.rangeopt = 1.5
self.assertRaises(ValueError, setrangeoptinvalid)
def test_as_dict(self):
'''Use the parameter list as a dictionary'''
self.assertEqual(self.recipe.param.boolopt,
self.recipe.param['boolopt'])
self.assertEqual(self.recipe.param.boolopt,
self.recipe.param['iiinstrument.rtest.bool_option'])
def test_dotted_par(self):
'''Use a parameter that has a dot in its alias'''
self.assertEqual(self.recipe.param.dot.opt,
self.recipe.param.dot['opt'])
self.assertEqual(self.recipe.param.dot.opt,
self.recipe.param['dot.opt'])
self.assertEqual(self.recipe.param.dot.opt,
self.recipe.param['iiinstrument.rtest.dotted.opt'])
def test_iterate(self):
'''Iteration over all parameters'''
for p in self.recipe.param:
self.assertTrue(isinstance(p, cpl.Parameter))
pars = [p.name for p in self.recipe.param]
self.assertEqual(len(pars), len(self.recipe.param))
self.assertTrue('stropt' in pars)
self.assertTrue('boolopt' in pars)
def test_set_dict(self):
'''Assign a dictionary to the parameter list'''
self.recipe.param = { 'stropt':'dmore', 'boolopt':True }
self.assertEqual(self.recipe.param.boolopt.value, True)
self.assertEqual(self.recipe.param.stropt.value, 'dmore')
# Check that we can assign a dictionary with the short names and string
self.recipe.param = { 'stropt':'dmore', 'boolopt':'False' }
self.assertEqual(self.recipe.param.boolopt.value, False)
# Check that we can assign a dictionary with the long names
self.recipe.param = { 'iiinstrument.rtest.string_option':'dless',
'iiinstrument.rtest.float_option':1.5,
'iiinstrument.rtest.bool_option':True }
self.assertEqual(self.recipe.param.stropt.value, 'dless')
self.assertEqual(self.recipe.param.floatopt.value, 1.5)
self.assertEqual(self.recipe.param.boolopt.value, True)
def test_param_load_from_esorexrc(self):
'''Load parameters from an Esorex .rc file'''
self.recipe.param = rtest_esorexrc
self.assertEqual(self.recipe.param.stropt.value, 'more')
self.assertEqual(self.recipe.param.boolopt.value, False)
self.assertEqual(self.recipe.param.floatopt.value, 1.125)
self.assertEqual(self.recipe.param.intopt.value, -2)
self.assertEqual(self.recipe.param.enumopt.value, 'second')
self.assertEqual(self.recipe.param.rangeopt.value, 0.5)
self.assertEqual(self.recipe.param.dot.opt.value, 1)
def test_delete(self):
'''Delete all parameter values to reset to default'''
self.recipe.param.boolopt.value = True
self.recipe.param.stropt.value = 'something'
del self.recipe.param
self.assertEqual(self.recipe.param.stropt.value, None)
self.assertEqual(self.recipe.param.boolopt.value, None)
def test_dir(self):
'''[TAB] completition.
This requires to have the __dir__() method working.
'''
self.assertEqual(set(self.recipe.param.__dir__()),
set(p.name if '.' not in p.name
else p.name.split('.', 1)[0]
for p in self.recipe.param
))
def test_str(self):
'''Parameter string representation.
Since the string depends on the order of parameter, we check
that it evaluates to the correct dict.
'''
self.assertEqual(eval(str(self.recipe.param)), {
'stropt': None,
'boolopt': True,
'floatopt': 0.1,
'intopt': 2,
'enumopt': 'first',
'rangeopt': 0.1,
'crashing': 'no',
'memleak': False,
'sleep': 0.1,
'disabled': -0.1,
'dot.opt': 0})
def test_repr(self):
'''Canonical parameter string representation.
Since the string depends on the order of parameter, we check
that it evaluates to the correct dict.
'''
self.assertEqual(eval(repr(self.recipe.param)), {
'stropt': None,
'boolopt': True,
'floatopt': 0.1,
'intopt': 2,
'enumopt': 'first',
'rangeopt': 0.1,
'crashing': 'no',
'memleak': False,
'sleep': 0.1,
'disabled': -0.1,
'dot.opt': 0})
def test_eq(self):
'''Trivial equality test'''
self.assertTrue(self.recipe.param == self.recipe.param)
class RecipeCalib(RecipeTestCase):
def test_set(self):
'''Set a calibration frame'''
self.recipe.calib.FLAT = 'flat.fits'
self.assertEqual(self.recipe.calib.FLAT.frames, 'flat.fits')
def test_set_dict(self):
'''Assign a dictionary to the calibration frame list'''
self.recipe.calib = { 'FLAT':'flat2.fits' }
self.assertEqual(self.recipe.calib.FLAT.frames, 'flat2.fits')
def test_param_load_from_esorexsof(self):
'''Load calibration from an Esorex SOF file'''
self.recipe.calib = 'flat.fits FLAT\n'
self.assertEqual(self.recipe.calib.FLAT.frames, 'flat.fits')
def test_del(self):
'''Delete a calibration frame set'''
self.recipe.calib.FLAT = 'flat.fits'
del self.recipe.calib.FLAT
f = self.recipe.calib.FLAT.frames
self.assertEqual(f, None)
def test_del_all(self):
'''Delete all calibration frame sets'''
self.recipe.calib.FLAT = 'flat.fits'
del self.recipe.calib
try:
f = self.recipe.calib.FLAT.frames
except:
f = None
self.assertEqual(f, None)
def test_dir(self):
'''[TAB] completition.
This requires to have the __dir__() method working.
'''
self.assertEqual(set(self.recipe.calib.__dir__()),
set(f.tag for f in self.recipe.calib))
def test_str(self):
'''Calibration frames string representation'''
self.assertEqual(str(self.recipe.calib),
"{}")
def test_repr(self):
'''Canonical calibration frames string representation'''
self.assertEqual(repr(self.recipe.calib),
"{}")
def test_eq(self):
'''Trivial equality test'''
self.assertTrue(self.recipe.calib == self.recipe.calib)
class RecipeExec(RecipeTestCase):
def setUp(self):
RecipeTestCase.setUp(self)
self.flat_frame = fits.HDUList([
fits.PrimaryHDU(numpy.random.randint(0, 65001,
self.image_size))])
def test_frames_keyword_dict(self):
'''Raw and calibration frames specified as keyword dict'''
self.recipe.tag = None
res = self.recipe(raw = {'RRRECIPE_DOCATG_RAW': self.raw_frame },
calib = { 'FLAT':self.flat_frame })
self.assertTrue(isinstance(res, cpl.Result))
self.assertTrue(isinstance(res.THE_PRO_CATG_VALUE, fits.HDUList))
self.assertTrue(abs(self.raw_frame[0].data
- res.THE_PRO_CATG_VALUE[0].data).max() == 0)
try:
res.THE_PRO_CATG_VALUE.close()
except:
pass
def test_frames_keyword_calib(self):
'''Raw frame specified as keyword, calibration frame set in recipe'''
self.recipe.tag = None
self.recipe.calib.FLAT = self.flat_frame
res = self.recipe({'RRRECIPE_DOCATG_RAW':self.raw_frame})
self.assertTrue(isinstance(res, cpl.Result))
self.assertTrue(isinstance(res.THE_PRO_CATG_VALUE, fits.HDUList))
try:
res.THE_PRO_CATG_VALUE.close()
except:
pass
def test_frames_tag_keyword(self):
'''The 'tag' parameter'''
self.recipe.tag = None
self.recipe.calib.FLAT = self.flat_frame
res = self.recipe(self.raw_frame, tag = raw_tag)
self.assertTrue(isinstance(res, cpl.Result))
self.assertTrue(isinstance(res.THE_PRO_CATG_VALUE, fits.HDUList))
try:
res.THE_PRO_CATG_VALUE.close()
except:
pass
def test_frames_tag_attribute(self):
'''The 'tag' attribute'''
self.recipe.tag = raw_tag
res = self.recipe(self.raw_frame)
self.assertTrue(isinstance(res, cpl.Result))
self.assertTrue(isinstance(res.THE_PRO_CATG_VALUE, fits.HDUList))
try:
res.THE_PRO_CATG_VALUE.close()
except:
pass
def test_frames_one_element_input_list(self):
'''Use 1-element list as input'''
# --> we want a list back'''
res = self.recipe([self.raw_frame])
self.assertTrue(isinstance(res, cpl.Result))
self.assertFalse(isinstance(res.THE_PRO_CATG_VALUE, fits.HDUList))
self.assertTrue(isinstance(res.THE_PRO_CATG_VALUE, list))
try:
res.THE_PRO_CATG_VALUE[0].close()
except:
pass
def test_frames_many_element_input_list(self):
'''Use multiple files as input'''
# --> since we only get back one image, it is
# assumed to be a 'master', and we get back a plain frame'''
res = self.recipe([self.raw_frame, self.raw_frame])
self.assertTrue(isinstance(res, cpl.Result))
self.assertTrue(isinstance(res.THE_PRO_CATG_VALUE, fits.HDUList))
try:
res.THE_PRO_CATG_VALUE.close()
except:
pass
def test_output_dir_attribute(self):
'''Write an output dir specified as attribute'''
output_dir = os.path.join(self.temp_dir, 'out')
self.recipe.output_dir = output_dir
res = self.recipe(self.raw_frame)
self.assertTrue(isinstance(res, cpl.Result))
self.assertTrue(isinstance(res.THE_PRO_CATG_VALUE, str))
self.assertEqual(os.path.basename(res.THE_PRO_CATG_VALUE),
'rtest.fits')
self.assertTrue(os.path.isdir(output_dir))
self.assertTrue(os.path.isfile(res.THE_PRO_CATG_VALUE))
hdu = fits.open(res.THE_PRO_CATG_VALUE)
self.assertTrue(isinstance(hdu, fits.HDUList))
try:
hdu.close()
except:
pass
def test_output_dir_keyword(self):
'''Write an output dir specified as call keyword arg'''
output_dir = os.path.join(self.temp_dir, 'out')
res = self.recipe(self.raw_frame, output_dir = output_dir)
self.recipe.output_dir = output_dir
res = self.recipe(self.raw_frame)
self.assertTrue(os.path.isdir(output_dir))
self.assertTrue(isinstance(res, cpl.Result))
self.assertTrue(isinstance(res.THE_PRO_CATG_VALUE, str))
self.assertEqual(os.path.basename(res.THE_PRO_CATG_VALUE),
'rtest.fits')
self.assertTrue(os.path.isfile(res.THE_PRO_CATG_VALUE))
hdu = fits.open(res.THE_PRO_CATG_VALUE)
self.assertTrue(isinstance(hdu, fits.HDUList))
try:
hdu.close()
except:
pass
def test_param_default(self):
'''Test default parameter settings'''
res = self.recipe(self.raw_frame).THE_PRO_CATG_VALUE
self.assertEqual(res[0].header['HIERARCH ESO QC STROPT'].strip(),
self.recipe.param.stropt.default or '')
self.assertEqual(res[0].header['HIERARCH ESO QC BOOLOPT'],
self.recipe.param.boolopt.default)
self.assertEqual(res[0].header['HIERARCH ESO QC INTOPT'],
self.recipe.param.intopt.default)
self.assertEqual(res[0].header['HIERARCH ESO QC FLOATOPT'],
self.recipe.param.floatopt.default)
self.assertEqual(res[0].header['HIERARCH ESO QC ENUMOPT'],
self.recipe.param.enumopt.default)
self.assertEqual(res[0].header['HIERARCH ESO QC RANGEOPT'],
self.recipe.param.rangeopt.default)
try:
res.close()
except:
pass
def test_param_keyword_dict(self):
'''Parameter handling via keyword dict'''
res = self.recipe(self.raw_frame,
param = { 'stropt':'more' }).THE_PRO_CATG_VALUE
self.assertEqual(res[0].header['HIERARCH ESO QC STROPT'], 'more')
try:
res.close()
except:
pass
def test_param_keyword_dict_wrong(self):
'''Parameter handling via keyword dict'''
self.assertRaises(KeyError, self.recipe,
self.raw_frame, param = { 'wrong':True })
def test_param_setting(self):
'''Parameter handling via recipe setting'''
self.recipe.param.stropt = 'more'
with self.recipe(self.raw_frame).THE_PRO_CATG_VALUE as res:
self.assertEqual(res[0].header['HIERARCH ESO QC STROPT'], 'more')
def test_param_delete(self):
'''Delete a parameter in a second run after setting it'''
self.recipe.param.intopt = 123
with self.recipe(self.raw_frame).THE_PRO_CATG_VALUE as res:
pass
del self.recipe.param.intopt
with self.recipe(self.raw_frame).THE_PRO_CATG_VALUE as res:
self.assertEqual(res[0].header['HIERARCH ESO QC INTOPT'], 2)
def test_param_overwrite(self):
'''Overwrite the recipe setting param via via keyword arg'''
self.recipe.param.stropt = 'more'
res = self.recipe(self.raw_frame, param = {'stropt':'less'}).THE_PRO_CATG_VALUE
self.assertEqual(res[0].header['HIERARCH ESO QC STROPT'], 'less')
def test_param_types(self):
'''Parameter types'''
self.recipe.param.stropt = 'more'
self.recipe.param.boolopt = False
self.recipe.param.intopt = 123
self.recipe.param.floatopt = -0.25
self.recipe.param.enumopt = 'third'
self.recipe.param.rangeopt = 0.125
with self.recipe(self.raw_frame).THE_PRO_CATG_VALUE as res:
self.assertEqual(res[0].header['HIERARCH ESO QC STROPT'], 'more')
self.assertEqual(res[0].header['HIERARCH ESO QC BOOLOPT'], False)
self.assertEqual(res[0].header['HIERARCH ESO QC INTOPT'], 123)
self.assertEqual(res[0].header['HIERARCH ESO QC FLOATOPT'], -0.25)
self.assertEqual(res[0].header['HIERARCH ESO QC ENUMOPT'], 'third')
self.assertEqual(res[0].header['HIERARCH ESO QC RANGEOPT'], 0.125)
def test_disabled(self):
'''Parameter with CLI disabled'''
self.assertFalse(self.recipe.param.disabled.enabled[0])
self.assertTrue(self.recipe.param.intopt.enabled[0])
# self.recipe.param.disabled = 0.2
# res = self.recipe(self.raw_frame)
# self.assertEqual(res[0].header['HIERARCH ESO QC DISABLED'], 0.2)
# try:
# res.close()
# except:
# pass
def test_environment_setting(self):
'''Additional environment parameter via recipe setting'''
self.recipe.env['TESTENV'] = 'unkk'
with self.recipe(self.raw_frame).THE_PRO_CATG_VALUE as res:
self.assertEqual(res[0].header['HIERARCH ESO QC TESTENV'], 'unkk')
def test_environment_keyword(self):
'''Additional environment parameter via recipe call keyword'''
with self.recipe(self.raw_frame,
env = {'TESTENV':'kknu'}).THE_PRO_CATG_VALUE as res:
self.assertEqual(res[0].header['HIERARCH ESO QC TESTENV'], 'kknu')
def test_error(self):
'''Error handling'''
self.recipe.tag = 'some_unknown_tag'
self.assertRaises(cpl.CplError, self.recipe, self.raw_frame)
def test_parallel(self):
'''Parallel execution'''
results = list()
for i in range(20):
# mark each frame so that we can see their order
self.raw_frame[0].header['HIERARCH ESO RAW1 NR'] = i
results.append(self.recipe(self.raw_frame, param = {'intopt':i},
env = {'TESTENV':('knu%02i' % i)},
threaded = True))
for i, res in enumerate(results):
# check if we got the correct type
self.assertTrue(isinstance(res.THE_PRO_CATG_VALUE, fits.HDUList))
# check if we have the correct parameter
self.assertEqual(res.THE_PRO_CATG_VALUE[0].header[
'HIERARCH ESO QC INTOPT'], i)
# check if we have the correct environment
self.assertEqual(res.THE_PRO_CATG_VALUE[0].header[
'HIERARCH ESO QC TESTENV'], ('knu%02i' % i))
# check if we have the correct input frame
self.assertEqual(res.THE_PRO_CATG_VALUE[0].header[
'HIERARCH ESO RAW1 NR'], i)
# check that the data were moved correctly
self.assertTrue(abs(self.raw_frame[0].data
- res.THE_PRO_CATG_VALUE[0].data).max() < 1e-6)
try:
res.THE_PRO_CATG_VALUE.close()
except:
pass
def test_error_parallel(self):
'''Error handling in parallel execution'''
self.recipe.tag = 'some_unknown_tag'
res = self.recipe(self.raw_frame, threaded = True)
def get(x):
return x.THE_PRO_CATG_VALUE
self.assertRaises(cpl.CplError, get, res)
def test_md5sum_result(self):
'''MD5sum of the result file'''
self.recipe.tag = raw_tag
res = self.recipe(self.raw_frame)
key = 'DATAMD5'
md5sum = res.THE_PRO_CATG_VALUE[0].header[key]
try:
res.THE_PRO_CATG_VALUE.close()
except:
pass
self.assertNotEqual(md5sum, 'Not computed')
self.assertEqual(len(md5sum),
len('9d123996fa9a7bda315d07e063043454'))
def test_md5sum_calib(self):
'''Created MD5sum for a HDUList calib file'''
self.recipe.tag = raw_tag
self.recipe.calib.FLAT = self.flat_frame
res = self.recipe(self.raw_frame)
key = 'HIERARCH ESO PRO REC1 CAL1 DATAMD5'
md5sum = res.THE_PRO_CATG_VALUE[0].header[key]
try:
res.THE_PRO_CATG_VALUE.close()
except:
pass
self.assertNotEqual(md5sum, 'Not computed')
self.assertEqual(len(md5sum),
len('9d123996fa9a7bda315d07e063043454'))
class RecipeCrashing(RecipeTestCase):
def _test_corrupted(self):
'''Handling of recipe crashes because of corrupted memory'''
self.recipe.param.crashing = 'free'
self.assertRaises(cpl.RecipeCrash, self.recipe, self.raw_frame)
def _test_segfault(self):
'''Handling of recipe crashes because of segmentation fault'''
self.recipe.param.crashing = 'segfault'
self.assertRaises(cpl.RecipeCrash, self.recipe, self.raw_frame)
def _test_cleanup_after_crash(self):
'''Test that a second run after a crash will succeed'''
output_dir = os.path.join(self.temp_dir, 'out')
self.recipe.output_dir = output_dir
self.recipe.param.crashing = 'segfault'
self.assertRaises(cpl.RecipeCrash, self.recipe, self.raw_frame)
del self.recipe.param.crashing
self.recipe(self.raw_frame)
class RecipeRes(RecipeTestCase):
def setUp(self):
RecipeTestCase.setUp(self)
self.res = self.recipe(self.raw_frame)
def tearDown(self):
RecipeTestCase.tearDown(self)
try:
res.THE_PRO_CATG_VALUE.close()
except:
pass
def test_attribute(self):
'''The result as an attribute'''
self.assertTrue(isinstance(self.res.THE_PRO_CATG_VALUE,
fits.HDUList))
def test_dict(self):
'''The result as an attribute'''
self.assertTrue(isinstance(self.res['THE_PRO_CATG_VALUE'],
fits.HDUList))
def test_in(self):
'''Check whether a tag is part of the result'''
self.assertTrue('THE_PRO_CATG_VALUE' in self.res)
self.assertFalse('Anothervalue' in self.res)
def test_keyerror(self):
'''Accessing an inexisting value'''
self.assertRaises(KeyError, lambda val: self.res[val], 'Anothervalue')
def test_len(self):
'''Length of the result'''
self.assertEqual(len(self.res), 1)
def test_iter(self):
'''Iterate over the result'''
for tag, hdu in self.res:
self.assertEqual(tag, 'THE_PRO_CATG_VALUE')
self.assertTrue(isinstance(hdu, fits.HDUList))
class RecipeEsorex(CplTestCase):
def tearDown(self):
CplTestCase.tearDown(self)
cpl.esorex.msg.level = cpl.esorex.msg.OFF
cpl.esorex.log.level = cpl.esorex.msg.OFF
def test_read_sof(self):
'''Read a SOF file'''
soffile = 'geometry_table1.fits GEOMETRY_TABLE\n' \
'geometry_table2.fits GEOMETRY_TABLE\n' \
'MASTER_BIAS-01.fits MASTER_BIAS\n' \
'MASTER_FLAT-01.fits MASTER_FLAT\n' \
'#sky_fullmoon_1.fits SKY\n' \
'sky_fullmoon_2.fits SKY\n'
self.assertEqual(cpl.esorex.load_sof(soffile),
{ 'GEOMETRY_TABLE': ['geometry_table1.fits',
'geometry_table2.fits' ],
'MASTER_BIAS': 'MASTER_BIAS-01.fits',
'MASTER_FLAT': 'MASTER_FLAT-01.fits',
'SKY': 'sky_fullmoon_2.fits' })
def test_read_rc(self):
'''Read an EsoRec .rc file'''
self.assertEqual(cpl.esorex.load_rc(rtest_esorexrc),
{ 'iiinstrument.rtest.string_option': 'more',
'iiinstrument.rtest.bool_option': 'False',
'iiinstrument.rtest.float_option': '1.125',
'iiinstrument.rtest.int_option': '-2',
'iiinstrument.rtest.enum_option': 'second',
'iiinstrument.rtest.range_option': '0.5',
'iiinstrument.rtest.dotted.opt': '1',
})
def test_esorex_init(self):
'''Init CPL from an esorex.rc file'''
rcfile = '''esorex.caller.recipe-dir=/some/dir
esorex.caller.msg-level=debug
esorex.caller.log-level=info
esorex.caller.log-dir=%s
esorex.caller.log-file=some.log''' % self.temp_dir
cpl.esorex.init(rcfile)
self.assertEqual(cpl.esorex.msg.level, cpl.esorex.msg.DEBUG)
self.assertEqual(cpl.esorex.log.level, cpl.esorex.msg.INFO)
self.assertEqual(cpl.esorex.log.dir, self.temp_dir)
self.assertEqual(cpl.esorex.log.filename, 'some.log')
self.assertEqual(cpl.Recipe.path, ['/some/dir'])
def test_esorex_log(self):
'''Write a logfile controlled by the convienence logger'''
dirname = os.path.join(self.temp_dir, 'log')
filename = 'python-cpl.log'
log_msg = 'Esorex convienence log'
os.mkdir(dirname)
cpl.esorex.log.dir = dirname
cpl.esorex.log.filename = filename
cpl.esorex.log.level = cpl.esorex.log.INFO
filename = os.path.join(dirname, filename)
logging.getLogger('cpl').info(log_msg)
self.assertTrue(os.path.exists(filename))
logfile = open(filename)
log_content = logfile.read()
logfile.close()
self.assertTrue(log_msg in log_content)
self.assertTrue('INFO' in log_content)
def test_esorex_log_off(self):
'''Switch the logfile off after writing something'''
dirname = os.path.join(self.temp_dir, 'log')
filename = 'python-cpl_off.log'
log_msg = 'Esorex convienence log'
os.mkdir(dirname)
cpl.esorex.log.dir = dirname
cpl.esorex.log.filename = 'python-cpl_debug.log'
cpl.esorex.log.level = 'debug'
logging.getLogger('cpl').debug(log_msg)
cpl.esorex.log.filename = filename
cpl.esorex.log.level = 'off'
logging.getLogger('cpl').debug(log_msg)
filename = os.path.join(dirname, filename)
logfile = open(filename)
log_content = logfile.read()
logfile.close()
self.assertEqual(len(log_content), 0)
class RecipeLog(RecipeTestCase):
def setUp(self):
RecipeTestCase.setUp(self)
self.handler = RecipeLog.THandler()
logging.getLogger('cpl.rtest').addHandler(self.handler)
self.other_handler = RecipeLog.THandler()
logging.getLogger('othername').addHandler(self.other_handler)
def tearDown(self):
RecipeTestCase.tearDown(self)
logging.getLogger('cpl.rtest').removeHandler(self.handler)
logging.getLogger('othername').removeHandler(self.other_handler)
class THandler(logging.Handler):
def __init__(self):
logging.Handler.__init__(self)
self.logs = list()
def emit(self, record):
self.logs.append(record)
def clear(self):
self.logs = list()
def test_logging_DEBUG(self):
'''Injection of CPL messages into the python logging system'''
self.handler.clear()
logging.getLogger().setLevel(logging.DEBUG)
res = self.recipe(self.raw_frame)
try:
res.THE_PRO_CATG_VALUE.close()
except:
pass
# check that the logs are not empty
self.assertNotEqual(len(self.handler.logs), 0)
funcnames = set()
lognames = set()
for r in self.handler.logs:
# Check that we saved the right class
self.assertTrue(isinstance(r, logging.LogRecord))
# Check that a message was provided
self.assertNotEqual(r.msg, None)
# Check that a function name was provided
self.assertNotEqual(r.funcName, None)
funcnames.add(r.funcName)
lognames.add(r.name)
# Check that we had at least one expected entry
self.assertTrue('cpl_dfs_product_save' in funcnames)
self.assertTrue('cpl.rtest.cpl_dfs_product_save' in lognames)
def test_logging_INFO(self):
'''Filtering INFO messages'''
self.handler.clear()
logging.getLogger('cpl.rtest').setLevel(logging.INFO)
res = self.recipe(self.raw_frame)
try:
res.THE_PRO_CATG_VALUE.close()
except:
pass
# check that the logs are not empty
self.assertNotEqual(len(self.handler.logs), 0)
def test_logging_WARN(self):
'''Filtering WARN messages'''
self.handler.clear()
logging.getLogger('cpl.rtest').setLevel(logging.WARN)
res = self.recipe(self.raw_frame)
try:
res.THE_PRO_CATG_VALUE.close()
except:
pass
# check that the logs are not empty
self.assertNotEqual(len(self.handler.logs), 0)
def test_logging_ERROR(self):
'''Filtering of error messages'''
# There is no error msg written by the recipe, so it should be empty.
self.handler.clear()
logging.getLogger('cpl.rtest').setLevel(logging.ERROR)
res = self.recipe(self.raw_frame)
try:
res.THE_PRO_CATG_VALUE.close()
except:
pass
self.assertEqual(len(self.handler.logs), 0)
def test_logging_common(self):
'''Log name specification on recipe call'''
self.handler.clear()
self.other_handler.clear()
res = self.recipe(self.raw_frame, logname = 'othername')
try:
res.THE_PRO_CATG_VALUE.close()
except:
pass
self.assertNotEqual(len(self.other_handler.logs), 0)
def test_logging_multiline(self):
'''Multiple lines in messages'''
self.handler.clear()
logging.getLogger('cpl.rtest').setLevel(logging.INFO)
res = self.recipe(self.raw_frame)
try:
res.THE_PRO_CATG_VALUE.close()
except:
pass
# check that the multi line log sequence appears
multiline = 0
tag = 'multiline#'
for l in self.handler.logs:
if tag not in l.msg:
continue
i = int(l.msg[l.msg.index(tag)+len(tag):].split()[0])
self.assertEqual(multiline + 1, i)
multiline = i
self.assertEqual(multiline, 3)
def test_result(self):
'''"log" attribute of the result object'''
res = self.recipe(self.raw_frame)
# Check that we get a not-empty list back
self.assertTrue(isinstance(res.log, list))
self.assertNotEqual(len(res.log), 0)
self.assertTrue(isinstance(res.log[0], logging.LogRecord))
# Check that we can read debug messages
self.assertNotEqual(len(res.log.debug), 0)
self.assertTrue(isinstance(res.log.debug[0], str))
# Check that we can read info messages
self.assertNotEqual(len(res.log.info), 0)
self.assertTrue(isinstance(res.log.info[0], str))
# Check that we can read warning messages
self.assertNotEqual(len(res.log.warning), 0)
self.assertTrue(isinstance(res.log.warning[0], str))
# Check that there were no error messages
self.assertEqual(len(res.log.error), 0)
try:
res.THE_PRO_CATG_VALUE.close()
except:
pass
def test_error(self):
'''"log" attribute of the CplError object'''
try:
self.recipe('test.fits')
except cpl.CplError as r:
res = r
# Check that we get a not-empty list back
self.assertTrue(isinstance(res.log, list))
self.assertNotEqual(len(res.log), 0)
self.assertTrue(isinstance(res.log[0], logging.LogRecord))
# Check that we can read debug messages
self.assertNotEqual(len(res.log.debug), 0)
self.assertTrue(isinstance(res.log.debug[0], str))
# Check that we can read info messages
self.assertNotEqual(len(res.log.info), 0)
self.assertTrue(isinstance(res.log.info[0], str))
# Check that we can read warning messages
self.assertNotEqual(len(res.log.warning), 0)
self.assertTrue(isinstance(res.log.warning[0], str))
# Check that we can read error messages
self.assertNotEqual(len(res.log.error), 0)
self.assertTrue(isinstance(res.log.error[0], str))
# Check that we can convert the error to a string
self.assertTrue(isinstance(res.__str__(), str))
# Check that we can iterate over error messages
for r in res:
self.assertTrue(isinstance(res, cpl.CplError))
class ProcessingInfo(RecipeTestCase):
def setUp(self):
RecipeTestCase.setUp(self)
'''Parameter storage in the result'''
self.recipe.param.stropt = 'more'
self.recipe.param.boolopt = False
self.recipe.param.intopt = 123
self.recipe.param.floatopt = -0.25
self.recipe.param.enumopt = 'third'
self.recipe.param.rangeopt = 0.125
self.recipe.calib.FLAT = fits.HDUList([
fits.PrimaryHDU(numpy.random.randint(0, 65001,
self.image_size))])
self.res = self.recipe(self.raw_frame).THE_PRO_CATG_VALUE
self.pinfo = cpl.dfs.ProcessingInfo(self.res)
def tearDown(self):
RecipeTestCase.tearDown(self)
try:
self.res.close()
except:
pass
def test_list(self):
'''All processing infos as a list'''
pi = cpl.dfs.ProcessingInfo.list(self.res[0])
self.assertTrue(len(pi), 1)
self.assertTrue(pi[0], self.pinfo)
def test_param(self):
'''Parameter information'''
self.assertEqual(len(self.pinfo.param), len(self.recipe.param))
for p in self.recipe.param:
self.assertEqual(self.pinfo.param[p.name],
p.value if p.value is not None else p.default)
def test_calib(self):
'''Calibration frame information'''
self.assertEqual(len(self.pinfo.calib), 1)
self.assertEqual(self.pinfo.calib['FLAT'][-5:], '.fits')
def test_tag(self):
'''Input tag information'''
self.assertEqual(self.pinfo.tag, self.recipe.tag)
def test_raw(self):
'''Raw file information'''
self.assertEqual(self.pinfo.raw[-5:], '.fits')
def test_name(self):
'''Recipe and pipeline name information'''
self.assertEqual(self.pinfo.name, self.recipe.__name__)
self.assertEqual(self.pinfo.pipeline, 'iiinstrument')
def test_version(self):
'''Version information'''
self.assertEqual(self.pinfo.version[0], self.recipe.version[0])
self.assertEqual(self.pinfo.cpl_version, 'cpl-%s' % self.recipe.cpl_version)
def test_md5(self):
'''MD5 checksums'''
md5sum = self.res[0].header.get('DATAMD5')
self.assertEqual(md5sum, self.pinfo.md5sum)
md5sum = self.res[0].header.get('HIERARCH ESO PRO REC1 CAL1 DATAMD5')
self.assertEqual(md5sum, self.pinfo.md5sums[self.pinfo.calib['FLAT']])
def test_recipe(self):
'''Recreate and configure the recipe'''
recipe = self.pinfo.create_recipe()
self.assertTrue(isinstance(recipe, cpl.Recipe))
self.assertEqual(len(recipe.calib), 1)
self.assertEqual(recipe.calib.FLAT.frames[-5:], '.fits')
self.assertEqual(recipe.__name__, self.recipe.__name__)
self.assertEqual(recipe.version[0], self.recipe.version[0])
self.assertEqual(len(recipe.param), len(self.recipe.param))
if __name__ == '__main__':
unittest.main()
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