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import os
import imp
from distutils.core import setup
from csb.build import ROOT
try:
__doc__ = open('README.txt').read()
except IOError:
pass
LOCATION = os.path.abspath(os.path.dirname(__file__))
JUNK = ['.svn', '.hg', '.hgtags']
NAME = ROOT
VERSION = imp.load_source('____csb', os.path.join(LOCATION, ROOT, '__init__.py')).Version()
AUTHOR = "Michael Habeck et al."
EMAIL = "ivan.kalev@gmail.com"
URL = "http://csb.codeplex.com"
SUMMARY = "Computational Structural Biology Toolbox"
DESCRIPTION = __doc__
LICENSE = 'MIT'
REQUIRES = ['numpy', 'scipy']
def sourcetree(root='csb', junk=JUNK):
"""
Since distutils requires to HARD CODE the entire package hierarchy here,
we need this function to load the source tree structure dynamically.
@param root: name of the root package; this is 'csb'. Must be relative!
@type root: str
@param junk: skip those directories
@type junk: tuple
@return: a list of "package" names
@rtype: list
"""
junk = set(junk)
items = []
curdir = os.path.abspath(os.curdir)
cwd = os.path.dirname(__file__) or '.'
os.chdir(cwd)
if root.startswith(os.path.sep):
raise ValueError('root must be a relative path')
elif not os.path.isdir(os.path.join('.', root)):
raise ValueError('root package "{0}" not found in {1}.'.format(root, cwd))
for entry in os.walk(root):
directory = entry[0]
parts = set(directory.split(os.path.sep))
init = os.path.join(directory, '__init__.py')
# take all packages: directories with __init__, except if a junk
# directory is found at any level in the tree
if os.path.isfile(init) and junk.isdisjoint(parts):
items.append(directory)
os.chdir(curdir)
return items
def datatree(package, dataroot, junk=JUNK, mask='*.*'):
"""
Since distutils will crash if the data root folder contains any subfolders,
we need this function to retrieve the data tree.
@param package: root "package", containing a data folder. This is a
relative path, e.g. "csb/test"
@type package: str
@param dataroot: name of the data root directory for C{package},
relative to C{package}
@type dataroot: str
@param junk: skip those directories
@type junk: tuple
@return: a list of all glob patterns with all subdirectories of the data
root, including the root itself. The paths returned are relative
to C{package}
@rtype: list
"""
junk = set(junk)
items = []
curdir = os.path.abspath(os.curdir)
cwd = os.path.dirname(__file__) or '.'
os.chdir(cwd)
if package.startswith(os.path.sep):
raise ValueError('package must be a relative path')
elif not os.path.isdir(os.path.join('.', package)):
raise ValueError('package "{0}" not found in {1}.'.format(package, cwd))
os.chdir(package)
for entry in os.walk(dataroot):
directory = entry[0]
parts = set(directory.split(os.path.sep))
# take all directories, except if a junk dir is found at any level in the tree
if junk.isdisjoint(parts):
item = os.path.join(directory, mask)
items.append(item)
os.chdir(curdir)
return items
def build():
test = os.path.join('csb', 'test')
nmr = os.path.join('csb', 'bio', 'nmr')
return setup(
name=NAME,
packages=sourcetree(NAME, JUNK),
package_data={
test: datatree(test, 'data', JUNK, '*.*'),
nmr: datatree(nmr, 'resources', JUNK, '*.*')
},
version=VERSION.short,
author=AUTHOR,
author_email=EMAIL,
url=URL,
description=SUMMARY,
long_description=DESCRIPTION,
license=LICENSE,
requires=REQUIRES,
classifiers=(
'Development Status :: 5 - Production/Stable',
'Intended Audience :: Developers',
'Intended Audience :: Science/Research',
'License :: OSI Approved :: MIT License',
'Operating System :: OS Independent',
'Programming Language :: Python',
'Programming Language :: Python :: 2.6',
'Programming Language :: Python :: 2.7',
'Programming Language :: Python :: 3.1',
'Programming Language :: Python :: 3.2',
'Topic :: Scientific/Engineering',
'Topic :: Scientific/Engineering :: Bio-Informatics',
'Topic :: Scientific/Engineering :: Mathematics',
'Topic :: Scientific/Engineering :: Physics',
'Topic :: Software Development :: Libraries'
)
)
if __name__ == '__main__':
build()
|
