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.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.47.5.
.TH CSB-PRECISION "1" "November 2017" "csb-precision 1.2.5" "User Commands"
.SH NAME
csb-precision \- measure the precision and coverage of a fragment library
.SH DESCRIPTION
usage: csb\-precision [\-h] \fB\-p\fR PDB \fB\-n\fR NATIVE [\-c CHAIN] [\-t TOP] [\-C CPU]
.TP
[\-r RMSD] [\-o OUTPUT] [\-s]
library
.PP
Measure the precision and coverage of a fragment library stored in Rosetta
NNmake format.
.SS "positional arguments:"
.TP
library
Fragment library file in Rosetta NNmake format
.SS "optional arguments:"
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.TP
\fB\-p\fR PDB, \fB\-\-pdb\fR PDB
the PDB database (a directory containing all PDB
files)
.TP
\fB\-n\fR NATIVE, \fB\-\-native\fR NATIVE
native structure of the target (PDB file)
.TP
\fB\-c\fR CHAIN, \fB\-\-chain\fR CHAIN
chain identifier (if not specified, the first chain)
.TP
\fB\-t\fR TOP, \fB\-\-top\fR TOP
read top N fragments per position (default=25)
.TP
\fB\-C\fR CPU, \fB\-\-cpu\fR CPU
maximum degree of parallelism (default=4)
.TP
\fB\-r\fR RMSD, \fB\-\-rmsd\fR RMSD
RMSD cutoff for precision and coverage (default=1.5)
.TP
\fB\-o\fR OUTPUT, \fB\-\-output\fR OUTPUT
output directory (default=.)
.TP
\fB\-s\fR, \fB\-\-save\-structures\fR
create a PDB file for each fragment, superimposed over
the native (default=False)
.SH AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
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