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.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.47.5.
.TH CSB-EMBD "1" "November 2017" "csb-embd 1.2.5" "User Commands"
.SH NAME
csb-embd \- Sharpening of EM maps by non-negative blind deconvolution
.SH DESCRIPTION
usage: csb\-embd [\-h] [\-s PSF_SIZE] [\-o OUTPUT] [\-i ITERATIONS]
.IP
[\-f OUTPUT_FREQUENCY] [\-v]
mapfile
.PP
Sharpening of EM maps by non\-negative blind deconvolution. For details see:
Hirsch M, Schoelkopf B and Habeck M (2010) A New Algorithm for Improving the
Resolution of Cryo\-EM Density Maps.
.SS "positional arguments:"
.TP
mapfile
Input Cryo EM file in CCP4 MRC format
.SS "optional arguments:"
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.TP
\fB\-s\fR PSF_SIZE, \fB\-\-psf\-size\fR PSF_SIZE
size of the point spread function (default=15)
.TP
\fB\-o\fR OUTPUT, \fB\-\-output\fR OUTPUT
output directory of the sharpened maps (default=.)
.TP
\fB\-i\fR ITERATIONS, \fB\-\-iterations\fR ITERATIONS
number of iterations (default=1000)
.TP
\fB\-f\fR OUTPUT_FREQUENCY, \fB\-\-output\-frequency\fR OUTPUT_FREQUENCY
create a map file each f iterations (default=50)
.TP
\fB\-v\fR, \fB\-\-verbose\fR
verbose mode (default=False)
.SH AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
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