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Source: python-cutadapt
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Olivier Sallou <osallou@debian.org>,
Andreas Tille <tille@debian.org>,
Kevin Murray <kdmfoss@gmail.com>,
Steffen Moeller <moeller@debian.org>,
Section: python
Priority: optional
Build-Depends: debhelper-compat (= 13),
dh-sequence-python3,
libpython3-all-dev,
python3-all-dev:any,
pybuild-plugin-pyproject,
python3-setuptools,
python3-setuptools-scm:native,
python3-pytest <!nocheck>,
python3-pytest-mock <!nocheck>,
python3-pytest-timeout <!nocheck>,
python3-xopen <!nocheck>,
python3-dnaio (>= 1.2.0) <!nocheck>,
python3-pytest <!nocheck>,
cython3:native
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/python-cutadapt
Vcs-Git: https://salsa.debian.org/med-team/python-cutadapt.git
Homepage: https://cutadapt.readthedocs.io/
Testsuite: autopkgtest-pkg-pybuild
Rules-Requires-Root: no
Package: python3-cutadapt
Architecture: any
Depends: ${misc:Depends},
${python3:Depends},
${shlibs:Depends},
python3-xopen,
python3-dnaio (>= 1.2.0),
pigz
Description: Clean biological sequences from high-throughput sequencing reads (Python 3)
Cutadapt helps with biological sequence clean tasks by finding the adapter
or primer sequences in an error-tolerant way.
It can also modify and filter reads in various ways.
Adapter sequences can contain IUPAC wildcard characters.
Also, paired-end reads and even colorspace data is supported.
If you want, you can also just demultiplex your input data, without removing
adapter sequences at all.
.
This package contains the Python 3 module.
Package: cutadapt
Architecture: all
Section: science
Depends: ${misc:Depends},
${python3:Depends},
${shlibs:Depends},
python3-cutadapt
Description: Clean biological sequences from high-throughput sequencing reads
Cutadapt helps with biological sequence clean tasks by finding the adapter
or primer sequences in an error-tolerant way.
It can also modify and filter reads in various ways.
Adapter sequences can contain IUPAC wildcard characters.
Also, paired-end reads and even colorspace data is supported.
If you want, you can also just demultiplex your input data, without removing
adapter sequences at all.
.
This package contains the user interface.
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