1 2 3 4 5 6 7 8 9
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r1 5' adapter and 3' adapter 0 0 10 AAAAAAAAAA CCCCCCCCCCTTTTTTTTTTGGGGGGG linkedadapter;1
r1 5' adapter and 3' adapter 0 10 20 CCCCCCCCCC TTTTTTTTTT GGGGGGG linkedadapter;2
r2 without any adapter -1 GGGGGGGGGGGGGGGGGGG
r3 5' adapter, partial 3' adapter 0 0 10 AAAAAAAAAA CCCGGCCCCCTTTTT linkedadapter;1
r3 5' adapter, partial 3' adapter 0 10 15 CCCGGCCCCC TTTTT linkedadapter;2
r4 only 3' adapter -1 GGGGGGGGGGCCCCCCCCCCTTTTTTTTTTGGGGGGG
r5 only 5' adapter 0 0 10 AAAAAAAAAA CCCCCCCCCCGGGGGGG linkedadapter;1
r6 partial 5' adapter -1 AAAAAACCCCCCCCCCTTTTTTTTTTGGGGGGG
r7 5' adapter plus preceding bases -1 AACCGGTTTTAAAAAAAAAACCCCCCCCCCTTTTTTTTTTGGGGGGG
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