File: 454.fa

package info (click to toggle)
python-cutadapt 4.7-2
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 1,992 kB
  • sloc: python: 9,695; ansic: 177; makefile: 159
file content (118 lines) | stat: -rw-r--r-- 9,727 bytes parent folder | download | duplicates (9)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
>000163_1255_2627 length=52 uaccno=E0R4ISW01DCIQD
CCATCTCATCCCTGCGTGTCCCATCTGTTCCCTTCCTTGTCTCAGTGTGGTG
>000652_1085_0667 length=122 uaccno=E0R4ISW01CXJXP
ATTGAAGAGGTTGGTAAGTTTTAAGTTGGTAGGTGGTTGGGGAGTGGTTGGAGAGGAGTTGTTGGGAGTTTGTGTCCTGCTGAGACACGCAACGGGGATAGGCAAGGCACACAGGGGATAGG
>000653_1285_1649 length=135 uaccno=E0R4ISW01DE4SJ
AATTAGTCGAGCGTTGTGGTGGGTATTTGTAATTTTAGCTACTCTGAAGGCTGAGGCAGGAGAACTGCTTGAACCCGGGAGGCGGAGGTTGCTGAGACACGCAACAGGAGATAGGCAAGGCACACAGGGGATAGG
>000902_0715_2005 length=92 uaccno=E0R4ISW01B03K3
GGGTGTTGAATTTAATATGTAGTATATTGATTTGTGATGATTATTTTGCCTGAGACACGCAACAGGGGTAGGCAAGGCACACAGGGGATAGG
>001146_1255_0340 length=92 uaccno=E0R4ISW01DCGYU
GGGTGTTGAATTTAATATGTAGTATATTGATTTGTGATGATTATTTTGCCTGAGACACGCAACAGGGGTAGGCAAGGCACACAGGGGATAGG
>001210_1147_1026 length=171 uaccno=E0R4ISW01C2Z5W
TAGGGAGGTGGTGAGTGTTGTGTGTTTAGATTGTGTGTGGTGGTTGGGAGTGGGAGTTGTATTTTAGGGTGTGGGTTGGGAGAGTGAAAGTTGTGGGTGTTTTGGATGGTGGGTTAGGTGGTTGTGCCTGAGACACGCAACAGGGGAAAGGCAAGGCACACAGGGGATAGG
>001278_1608_2022 length=109 uaccno=E0R4ISW01D7HW4
CACACACACTCTTCCCCATACCTACTCACACACACACACACACACACAAACATACACAAATAATTCTGAGACACGCAACAGGAGATAGGCAAGGCACACAGGGGATAGG
>001333_1518_1176 length=142 uaccno=E0R4ISW01DZKTM
AATTGTCGTTTGATTGTTGGAAAGTAGAGGGTCGGGTTGGGGTAGATTCGAAAGGGGAATTTTGAGAAAAGAAATGGAGGGAGGTAGGAAAATTTTTTGCTGAGACACGCAACAGGGGTAGGCAAGGCACACAGGGGATAGG
>001398_1584_1549 length=154 uaccno=E0R4ISW01D5DPB
TAATGAAATGGAATGGAATGGAATGGAATGAAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGAAATGGAATGGAGTATAAAGGAATGGAATTACTGAGACACGCAACAGGGGAAGGCAAGGCACACAGGGGATAGG
>001455_1136_2179 length=92 uaccno=E0R4ISW01C12AD
GGGTGTTGAATTTAATATGTAGTATATTGATTTGTGATGATTATTTTGCCTGAGACACGCAACAGGGGTAGGCAAGGCACACAGGGGATAGG
>001481_1165_0549 length=92 uaccno=E0R4ISW01C4KON
GGGTGTTGAATTTAATATGTAGTATATTGATTTGTGATGATTATTTTGCCTGAGACACGCAACAGGGGTAGGCAAGGCACACAGGGGATAGG
>001744_1376_3512 length=144 uaccno=E0R4ISW01DM5T2
TAAGTAGGGAAGGTTTGAGGTTGTTGGTGTTGGTAGTAGGGGTGTTTTAGTTAGGGGTTGTAGTTTGTTAAGGGAATTTTATTTGAGTTTAGAATTGAGGCTGAGACACGCAAAAGGGGATAGGCAAGGCACACAGGGGATAGG
>001893_1084_1137 length=162 uaccno=E0R4ISW01CXG4Z
TGTATATTTTGTTGGGTTTGTATATATTGTTAGGTGTGGTTGGTGAGTTGTATTGGTGGTGGTGTAAGGTGAGTGGAAATGGGAATGGATTGTAGATATGTTGGATTTGTGGTTTTTGGTTGAGACACGAACAGGGGATAGGCAAGGCACACAGGGGATAGG
>001927_0254_0706 length=182 uaccno=E0R4ISW01AWLLG
TGGAATCATCTAAGGGACACAAATAGAATCATCATTGAATGGAATCGAATGGAATCATCTAATGTACTCGAATGGAATTATTATTGAATAGAATAGAATGGAATTATCGAATGGAATCAAATGGAATGTAATGGAATGCTGAGACACGCAACAGGGGAAAGGCAAGGCACACAGGGGATAGG
>002007_1338_1037 length=139 uaccno=E0R4ISW01DJRTR
GGGTTGTGTATTTGGATAGTATGTGGAAAATGGTATTAAAAAGAATTTGTAGTTGGATTGTTGGTGGTTATTTAGTTTTTGGGTAATGGGTAGATTCCTGAGACACGCAAAGGGATAGGCAAGGCACACAGGGGATAGG
>002186_1130_0654 length=92 uaccno=E0R4ISW01C1H5C
GGGTGTTGAATTTAATATGTAGTATATTGATTTGTGATGATTATTTTGCCTGAGACACGCAACAGGGGTAGGCAAGGCACACAGGGGATAGG
>002282_1237_2702 length=134 uaccno=E0R4ISW01DAXWG
AATTAGCCGGGCGTGATGGCGGGCGTTTGTAGTTTTAGTTATTCGGGAGGTTGAGGTAGGAGAATGGCGTGAATTCGGGAAGCGGAGTTTGCTGAGACACGCAACAGGGGTAGGCAAGGCACACAGGGGATAGG
>002382_1259_0997 length=107 uaccno=E0R4ISW01DCT37
TAAGGGTTGAAGCGAGGTAGGTAGTTTGTTTGTGGTTTTGTTTCGTATTTTTGTTTCGTATCCCTGAGACACGCAACAGAGGATAGGCAAGGCACACAGGGGATAGG
>002477_0657_0655 length=174 uaccno=E0R4ISW01BVY8H
TTTTTGGAAAGTTGGGTGGGTATAGTTTTGAGTAGTTAGAGGTATTATAATAGTATTAGGAAGTTGAATGTGAGGGTATAAGAGTTAATTTGATTTTTCGTTGATATGTTTGTTGTTTGAAGTTAGAGTGCTGAGACACGCAACAGGAGATAGGCAAGGCACACAGGGGATAGG
>003149_1553_2333 length=170 uaccno=E0R4ISW01D2OBZ
TATTTAGTTTTAGTTTGTTTAGGTGGTTATAGAATACGGAGTTTATGAAGTTGATTAGGAATATTATTAGTTGAATTAAGAATTGGGAAGAGAGGGGAACGGGAAGGGACGTGAGTGATTATTATTGCTGAGACACGCAAAGGGGATAGGCAAGGCACACAGGGGATAGG
>003194_1475_2845 length=101 uaccno=E0R4ISW01DVT7J
TATTTTGGGTTAAGTCGGGTTTAGTTGTTAGGGCGAGAAGTTAGTTGTTGACCCCTGCTGAGACACGCAAAAGGGGATAGGCAAGGCACACAGGGGATAGG
>003206_1315_0479 length=95 uaccno=E0R4ISW01DHQPD
GGGTTGGATAATATGATGGTGTTGGGGAATATTTAGGTATGTGGTTTGTGGCTGAGACACGCAACAGAGGATAGGCAAGGCACACAGGGGATAGG
>003271_0173_0314 length=125 uaccno=E0R4ISW01APHAK
GTTTATTTGTTATTTATTTTTAGGTTTAGAAGAGTGTTTGGTATTTATTGAGGATTTAGTATTTGTTAGAAGGATTGGATTCTGAGACACGCAACAGGGGGTAGGCAAGGCACACAGGGGATAGG
>003443_1737_2250 length=67 uaccno=E0R4ISW01EITSS
TGTAGGTTGTGTTGTAGGTTGTCCTGAGACACGCAACAGGGGAAAGGCAAGGCACACAGGGGATAGG
>002633_1776_1582 length=81 uaccno=E0R4ISW01EL8JK
CAGGGTGGATTGGGGAACACACAGTGTGGCCGCGTGATTCTGAGACACGCAACAGGGAAGGCAAGGCACACAGGGGATAGG
>002663_0725_3154 length=126 uaccno=E0R4ISW01B1Z2S
GCGTTTTATATTATAATTTAATATTTTGGAGGTTGGGTGCGGTGGTTTACGTTTGTAGTTTAGTATTTGGGAGGTTAAGGTAGCTGAGACACGCAACGGGGATAGGCAAGGCACACAGGGGATAGG
>002761_1056_4055 length=121 uaccno=E0R4ISW01CU2V9
AATTTTATTCGATTTATGTGATGATTTATTTATTTTATTTGAAGATGATTTTATTCGAGATTATTCGATGATTCCATTCCTGAGACACGCAAGGGGATAGGCAAGGCACACAGGGGATAGG
>002843_0289_2275 length=122 uaccno=E0R4ISW01AZPE9
ATTGAAGAGGTTGGTAAGTTTTAAGTTGGTAGGTGGTTGGGGAGTGGTTGGAGAGGAGTTGTTGGGAGTTTGTGTCCTGCTGAGACACGCAACGGGGATAGGCAAGGCACACAGGGGATAGG
>002934_1762_2177 length=92 uaccno=E0R4ISW01EK0Q7
GGGTGTTGAATTTAATATGTAGTATATTGATTTGTGATGATTATTTTGCCTGAGACACGCAACAGGGGTAGGCAAGGCACACAGGGGATAGG
>003515_1711_1058 length=122 uaccno=E0R4ISW01EGIPG
AATTGAATGGAATTATTATTGAATGGATTCGAATGGAATTATTATTGAATGGAATCATCGAGTGGAATCGAATGGAATCTGAGACACGCAACAGGGGAAAGGCAAGGCACACAGGGGATAGG
>003541_1276_1589 length=112 uaccno=E0R4ISW01DECAV
TAGTTTAGGGTGGTAGTTTGGATAAGGTAGTTTTACGGTTTAGTAGTAGTAGGTTAAGTAGGAAAACTGCTGAGACACGCAAAGGGGATAGGCAAGGCACACAGGGGATAGG
>003587_1522_1804 length=152 uaccno=E0R4ISW01DZXX6
AATTTATGTAGTGGAAGTAGGATATAAAGAATAGGTTAATGGATTTTGAGATATTAAAAAGAGTAGGAAATTAGTTGAGAGGTTAAGTAGTAGTTTATTTTAGCCACCCTGAGACACGCAACAGGAGATAGGCAAGGCACACAGGGGATAGG
>003592_0076_0430 length=134 uaccno=E0R4ISW01AGYTC
AATTAGTTAGGCGTGGTGGCGGGTGTTTGTAGTTTTAGTTATTCGGGAGGTTGAGGTAGGAGAATGTTGTGAATTTAGGAGGTGGAGTTTGCTGAGACACGCAACAGGGGAAGGCAAGGCACACAGGGGATAGG
>003957_0595_0965 length=173 uaccno=E0R4ISW01BQJIV
TAATATTAGGTGTCAATTTGACTGGATCGAGGGATGTGTGTCGGTGAGAGTCTCACTAGAGGTTGATATTTGAGTCGTTAGACTGGGAGAGGAAGACCGAACTGTCAAGTGTATGGGCGCCATCCAATTCTGAGACACGCAACAGGGGAAAGGCAAGGCACACAGGGGATAGG
>003986_1127_2937 length=103 uaccno=E0R4ISW01C1AFF
TAATGGAATGGAATTTTCGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATTACTGAGACACGCAACAGGGGAAGGCAAGGCACACAGGGGATAGG
>004012_1559_1491 length=111 uaccno=E0R4ISW01D26M9
TAGTGGATATAAATGGAATGGATTGGAATGGAATGGATACGAATGGAATGGATTGGAGTGGAATGGATTGACTGAGACACGCAACAGGGGGCAAGGCACACAGGGGATAGG
>004030_1508_2061 length=166 uaccno=E0R4ISW01DYPWF
TACGTATATACGCGTACGCGTATACGTATATACGCGTATACGTATACGCGTACGTATATATACGCGTATACGTTTACGTACGTACGCGTATATACGTACGTATACACACACGCATATGCATACTGAGACACGCAACAGGGGAAAGGCAAGGCACACAGGGGATAGG
>004038_1061_2047 length=152 uaccno=E0R4ISW01CVG5D
AATTGATTCGAATGGAATGGATTGGAATGGAACGGATTTGAATGGAATGGATTGGAATGGAATGGATTGAATGGAATGGATTGGAGAGGATTGGATTTGAATGGAATTCTGAGACACGCAACAGGGGAAAGGCAAGGCACACAGGGGATAGG
>004105_1121_0391 length=135 uaccno=E0R4ISW01C0PH1
AATTAGTTGGGCGTGGTGGCGAGTGTTTGTAATTTTAGTTATTTAGGAGGTTGAGGTAGGAGAATTATTTGAACCCGGTAGACGGAAGTTGCTGAGACACGCAACAGGGGAAAGGCAAGGCACACAGGGGATAGG
>004129_1618_3423 length=122 uaccno=E0R4ISW01D8ELT
AATTGAATGGTATTGAAAGGTATTAATTTAGTGGAATGGAATGGAATGTATTGGAATGGAAAATAATGGAATGGAGTGCTGAGACACGCAACAGGGGAAAGGCAAGGCACACAGGGGATAGG
>004203_0451_0902 length=115 uaccno=E0R4ISW01BDWC4
TAGTTGGTGTGTTGTAATCGAGACGTAGTTGGTTGGTACGGGTTAGGGTTTTGATTGGGTTGTTGTGTTTGCTGAGACACGCAACATGGGATAGGCAAGGCACACAGGGGATAGG
>004626_1937_0919 length=223 uaccno=E0R4ISW01E0CVD
TAGAGTAGATAGTAGGGTTAGAGAAGGTAGGGTACGTTTAGTTTGTTAGTAAGGTTTAAGTTTTGGGTGGGAAAGGTTAGTGGCGGGAAGGGACGAAGGTGGTAATCGAGAGTAGATTTAGAGAAGTTTTTGAAGTGGGCGTTGGGAGTTTTCGAAGTATTGAGAGAGAGGAGCTTGTGCTGAGACATGCAACAGAGGATAGGCAAGGCACACAGGGGATAGG
>004913_0641_2071 length=135 uaccno=E0R4ISW01BULRD
AATTAGTCGAGCGTTGTGGTGGGTATTTGTAATTTTAGCTACTCTGAAGGCTGAGGCAGGAGAACTGCTTGAACCCGGGAGGCGGAGGTTGCTGAGACACGCAACAGGAGATAGGCAAGGCACACAGGGGATAGG
>005063_0599_1983 length=127 uaccno=E0R4ISW01BQWX9
ATGTGGTGAAGATTGGTTTTAGGTGTTTTAATGTGGATTTTCAGGGGTTTTAAAAGGGTTGGGAGAGTGAAATATATATAAGGCTGAGACACGCAAAAGGGGATAGGCAAGGCACACAGGGGATAGG
>005140_0759_3209 length=116 uaccno=E0R4ISW01B4ZKR
TAGTATAGAGGGTTTGTGGTCGTGAGGGTGTTGATGGCGGGAGGGTTTTGATGGTAGGAGGGCCCGTGCTGTGCTGAGACACGCAACAGGGGAAGGCAAGGCACACAGGGGATAGG
>005351_0883_3221 length=137 uaccno=E0R4ISW01CFVHJ
TTAGGTGTTATAGTTGAGTGAGATGTTAGTGTTTAATGGTTTTATTTAGGTTGATGGGTTAATGAGGGGGTATTTGATAGTTTTGAAGATTTGACTGAGACACGCAACGGGGATAGGCAAGGCACACAGGGGATAGG
>005380_1702_1187 length=207 uaccno=E0R4ISW01EFQC1
TAGGGTTTTTCGAGTATATATTTAGTAGTACGCTCGACTTCTCTTATATAAAGGTTTTGGTTTTTATAGGTTTTTCCATTGTGTCTGCCTGGGGGAGGGCCCTTCTCCTTCAGGATACTGTAGCTTCTCTGCGTGATAAGCCAGCATTCACGGCTTTCAGGTGCTGAGACATGCAACAGGGGAAAGGCAAGGCACACAGGGGATAGG
>005568_1060_1943 length=63 uaccno=E0R4ISW01CVDWP
ATAGCGTATTTCTCACCTGCTGAGACACGCAACAGGGGAAAGGCAAGGCACACAGGGGATAGG
>005740_1536_2697 length=159 uaccno=E0R4ISW01D06VV
TAAAGAGGTGTTATTATTAGTTAGGAGAGGAGGTGGTTAGATAGTAGTGGGATTATAGGGGAATATAGAGTTGTTAGTTTAGGGATAAGGGATTGATCGATGGGTTAGGTCTCTGCTGAGACACGCAAAAGGGGATAGGCAAGGCACACAGGGGATAGG
>005753_1884_3877 length=95 uaccno=E0R4ISW01EVRNB
AAACTGAGTTGTGATGTTTGCATTCAACTCACAGAGTTCAACATTCCTTTAACTGAGACACGCAACAGGGTTAGGCAAGGCACACAGGGTATAGG
>read_equals_adapter 1a
TGAGACACGCAACAGGGGAAAGGCAAGGCACACAGGGGATAGG
>read_equals_start_of_adapter 1b
TGAGACACGCAACAGGGGAAAG
>read_equals_end_of_adapter 1c
GAAAGGCAAGGCACACAGGGGATAGG
>read_equals_middle_of_adapter 1d
GCAACAGGGGAAAGGCAAGGCACACAGG
>read_ends_with_adapter 2a
GCTACTCTGAAGGCTGAGGCAGGAGAACTGCTTGAACCCGGGAGGCGTGAGACACGCAACAGGGGAAAGGCAAGGCACACAGGGGATAGG
>read_ends_with_start_of_adapter 2b
GCTACTCTGAAGGCTGAGGCAGGAGAACTGCTTGAACCCGGGAGGCGTGAGACACGCAACAGGGGAAAGGCAAGG
>read_contains_adapter_in_the_middle 3
CGTAGTTGGTTGGTACGTGAGACACGCAACAGGGGAAAGGCAAGGCACACAGGGGATAGGGGTTAGGGTTTTGATTGGGTTGT
>read_starts_with_adapter 4a
TGAGACACGCAACAGGGGAAAGGCAAGGCACACAGGGGATAGGAAAGGTTTTGGTTTTTATAGGTTTTT
>read_starts_with_end_of_adapter 4b
AACAGGGGAAAGGCAAGGCACACAGGGGATAGGAAAGGTTTTGGTTTTTATAGGTTTTT