File: standard-test-chars-protein.fasta

package info (click to toggle)
python-dendropy 4.2.0%2Bdfsg-1
  • links: PTS, VCS
  • area: main
  • in suites: stretch
  • size: 68,392 kB
  • ctags: 3,947
  • sloc: python: 41,840; xml: 1,400; makefile: 15
file content (181 lines) | stat: -rw-r--r-- 7,891 bytes parent folder | download | duplicates (6)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
>a
PGSD*nCdNZ-Pa?kDyNxtPdiXh-zNnmYyAgEqmZyXrkYXzhAWMWSwyRST
RGDkItcmXNhyKAnfYlvTRqwQXrapfmLkvibbXQGleGksliC-EmNewqgc
ARSlZDWnAzXwEaSGK*Vz?yVYDvMQABZNrCCrqEmCFmiShDrpWZBqCSQy
blBEVSlCHhl?FITpyXklyxihtA*mcbCLnMq*pZprTSGRDregeEC-SIGN
wZb?tHRxqCibZeAEAGnYeCk-TVSDgNDegPcXfwKCMziIPbnAltrFzwxF
ksB?yChwaZ-XpLEyDZdPB*qFip-dGtWHeyLGm?iPPvdkRnbEaht?yIVC
rXhQswSwgCykeYChEgVKDLLKzmgxqmhkQ*KAbfKiFVXkt?HveNZbDExK
WdctQDQvpVHIYHtXzNWNE?lFtenNrMAnX*XkrtVRvpptYQeKwDKxgcnX
KtzB-TDHyHd-MiqaDvAFqatQ*??KlnVyaDAHkhkDkFKcrTiAq?a?mDig
e-aV-iBh

>b
ReMQIDvVAvwAavnawMZhglSXYnkYnfVyNgpiviyyNkffrhGf*cSwVHzE
LYhkDGDmeZmzLKBHPDvztkDaHa*NAmLBv-bNfEcTM*LszffdFHNfwWFI
ntSAaqAzDKcfEAHMaiQlfqpwlKdYglZlCCtPbEEXEWfShLVqCZfqCSKy
ygBMBaDQFBlaFYYCKCDXyfLHHqINemCvXaqaxXprwLeBhpezzEEtPcWq
tWMgBf-NKPPtZWvErFlqewkKTTrDwcsflScXBN?AMtZfHYPtanrEDwTi
qHGWlaW-an-ZDrEazQdiBqBgtEXlrwWteIgnS-KPPfXmzzXrWiCnywVC
*EhlrxAPgCyZRYCTxNWKpVWKwmaz*KM*Qt-LAi-SbIziTxzAtacFD-xK
WmcHYDexieHcAIwHTGNNRTAqwyrGrwHdXTSvKtVwBHpVmQSCmNkKl*nb
KpLKITWWyi?acQsmLvzNqQRkb??KldaPzkhCtxQEZFzcqIqkdKM?YlXn
TqmVhPHH

>c
PdpZ*BxHsZA*arThBiwtkd*XhWSmnyY?SVaqmpWeREG?*hDWVASbyXWL
nGWXWnePREzyxpnfHivmvrCQKZrkcgpGvVbln*PylgfsrLZhRtsizYyV
IFYfPDvnMqKnamSAK*VrWyE?-GzysNrcRNCzyCTKFmfahsrayrzbCqQy
C*BCyIAZNWR?Ta*TpXAlGxT-iVBmcbNLwXQvpcIieqMPXlygWd*-NnqQ
bvXVahRxqgHsY?baAGnICskRLdiDaymegkhVQyix*zcw?YqFYwMCqwrF
LxQKgCWHasii*QixDfMPVLqQlpRvrWZgenfLRCiyPvpfNBZeSvse?XrI
CDcwZqSwvCrtlY*KEgVCAfzDImQMInhfTAqRpLaZvVXkXgPiwMqqELQK
dDrQgElKzVLaywtEGegsa?CCtAcQpPAGRcGlkHQevsntbmWiiXKxgcGk
IIbm-LRHyndSM-DwNhXbqPzmnrFSH*s*zDgH-XkIkFLcWqNLqWaGmb?Q
d-PayiwC

>e
PwSDvnadzFfEby-HyeptwmLPh*cNxmYCkgEqkcCdkzYgeiTgbQsTiRST
BnDEnL?iehcXmA?fBdCwbDwQFpadedBkikzbVQrRmzkGxCCPlpRTCqHd
hRDLZQHyXyXvPe-Gx*aVlBavM-ZQW-xNhi*MrZbmwmQRhaqNkZal?vhD
wpExyrlCGPlstsTW?ZLNXFSGBH*QnYbwPMIFpzxri*PlnrwlyEviRImw
w?XsydAxxNdbvzAAGAQBvxTEHh?ygWDLgQarfxrLMLnBXsnIlVbGztTI
TsRXysfYa*isaRgderEdy*GadxbZydFVbbN-v?qMnvcLKhNWdBLhHIgr
rvAQZwSyzTyWpBecACsnBxLdhmggqKhcQiKnIIKlNzE-y*lA-qEblETK
FdsdwXcATDaYYdtdWAWvWzaW-PHksD?WWQVPiHVINnwYtQmFeFixeWQd
AbBV-TiQfHaYriIDbvnAncCcm?FKlz?yDDlksvnpkdHnQlvvi?a?eqyV
qAyRYImc

>f
DGAQnnZdPkEkapki*SxmF-qXmZpaEmyvPTPTeVMqPkztVnbTQQddyRLM
RC?kmSTMyTgaBKsfzSHxwLtPn?NpswBrAQeSXQGqIGMYCPmrGiCbwhcC
qmSrZqWlMYvwhavtMBMCaFVyaqFNqgWNrzCAImVbbhySvDxq?rWvbSfh
bmEEadrCwzGxPmppNgPl?dVYqeWvSTqBIYqPsqbrrSWqHrmgeIdwEVhX
p-XttHAnWtbfFkglYGKnKtMtCMHDtG*eNYCKbnPHM?rygDWAFt*??wbx
fNAHyAhAeZXayLEyMStPPVF*BiwsbDntfqZcqsiyETwaSNIreikWXkDI
reFEsZihaIPxenvpEgMRlkssxhxPRQhksXvRLXqcSavdC?HvRQBElMVk
x-ztKbMvpsGrHzmezeLNE?aFP?nHDvpv*xd*S*meaiXmYcatSDkxmbnb
dBQa-pnHaGEsPiAEEviAScrbyBDvlnXnVmBGDEzeYXhfBc?AqLI?m*i?
ewfVkiBh

>g
sWzDCnCiNyRPesGQMNgGcsHXa?FXnhXIAlEvphYAAmYGDaXwRPBRyRSI
QEDrIMQlqXIyexIGaAxTkxwdn*zcTmgmLZ*bElnBBXgsziYLiDNFPBpf
AvSlhtSvg?Nwh?YvCkIy?yvnYPmmpygLtVQighxqFzASwxrp-ZDdsRPb
tlKEPGAgqHlyYIndLXTltFRmwnhDcyLLgTw*p*NpDfPpszaRfsCvSIGW
EZSeyktHbAibRlwLdtDxDkVNdYiPvQW*Qfib*AEemyikEbSbzZtVNYIt
EsBGXCrtTD*Xpp-IDzMYrXIEidntMQvHryTEsgIIkShqdKBEQsYhVTQF
M?zQTwarSL*iftErEg-BDqkPDDgxQmTrQGXAqfwDV*xkhEKBLeSvcstY
NdttgpRAbGrCYmFnmyikk?fqtsnbrMDnW*WVpnaKtpiwIQbSwXxxycIZ
Ktz*-hQpQHW-?iRIDEILqevYFtGKEqIySDMM?YpDdIiWreTRMXa?nkiT
eVTknGnb

>h
RfSkGggaVrATryLDANbsidmkSP-LnYMyAgEWahZ*FkYtvhh?-BnarWGK
*KakIIvTkNYyFan*YbvTl?VBXPaxfDFkmyCeGkGBsklsxiCZKmNXtqac
zrrZWD?a-V?AslNwEKyzweaeDSMKGSXvracMFagnWAiThDhdWegtdP-s
kl?ZVRSccnlQtG*--XGFldixQRr-LwCRMEZrpZhGnYtkMEkgBqC-SGVN
zsb?y*RWQciLkvvEfwExqziwdFfsCyvepivLEPACMPR*HlxnxprdZtbv
-DQ?lCkrAZCXyGH-bZZSPrqkmtvMGPW*EmL-NBTtIEHZeNhHMcP?yGvp
akhELfGwlGbsCwdhx*lzSyxPylLvqfFkQXLnGAKNKXcMd?BdmzxSbgxR
PEPMiIZlYtsmrHtXyVlSbaBctdcNcwicz-XZeAEkdbepzEYEG-KxptnW
YQnLNTpghVItIyqailAF?nEr**-?M-gLaWAXShdDkRecALLIY?e-GhZF
s-aFRiBb

>i
yEws*nlbes?Px?ISyWBBAyt-drGgmmLyaZEmNZyEcZLXphAlsWQPHLSL
GGHqCIyDwQIMvAGfYzvZtVTfpWyhPgwvxPzGXBmI*NyslVZSaTNeZDgm
yELMxlcEvzdVEaSAK*Tz?yVYmRMeALEYGsryDVQFFkHMXkapDfYkWXQq
QcAEzSStDhnQyLHXyQMwyviAZHRiNWILF*W*XkCrSwiTDx?CQiCpvTfN
DvqbHx*pdCiHrbWEAiSQG?BHTfXgcwDeMPYXfw*WwiixTlYAbtTwpwXL
Xsl?WxlygwliptmyzZdnYmqtiGbVYQlyYhnRdEdvPGBzknZ*xmpzyeCL
XXXQLwSlSByk?YNhEKprmskFCmQbmghNk*KesAQcmWskb?LagwsDLPCP
WqawHyKvaTBI?HkwMPqlTcP-GXKzkMEFG*-*MBDRvpH?tQpNmkFwctWb
iHtg-vMGYHN-fiCYrvXGlheH*iMbha?mpKLYXcaPpMZbrQZhqETiDziQ
N-mcIQMF

>j
ixAgxnctNkzIVpkDkXDVBADeZWfNVEYwVXbyIZqBPkrAQvEKMMqg-wET
qDDhqAaLdYZgKLnbxlvcRxwQXMaRfWHkexVsSeGlwGBy-iCdErgFpwGc
keSDVFZMLZX*laxggInX?kfYcGq?qlbNrIkMhEmiYirVwXrPHidvBPVL
bQbEQClbabs?FITpqP-YyvyaYsZmNCmLIMdhLZfHTS-RIcGbwkpHSEkm
tnr?bnmwBdRbveZKyGQhYC?fT*SIxQDBZmdZpHKDYgZXHbdAmtcztw?F
vQTcDCzFeZcgNFyNVpqahMPSfz-dGNdIpKLKG?dHPwdMRMXKaGtXyFmC
rXZQSBAH*XhMbbKXEymKntLYCqcaqANCWQYPVipvnVZbDMHDeEiMekLK
WkcPLMdnhPDIhydCzTVNTP?zreFLcXpMeWpTytaEgpptYpMKwbKHgWZX
Bt*z-LGvCI*thyweqvfYq-dQdLdfInqPaXQwktSiyADwezqNQziY-DHE
*-AhhNBh

>k
FcfIDnLdQZ-hQw*DypxNNNiYhxpNVyYgCsHPnEyXrTcXDDQyaaVYI*sS
RdYfICgly?hwhAgNiFHyPTzYQMYpFGhxqihYXmDbeKLbNirXkENeNEgW
FQLZImZXVSlwEaSarK?DdyQY*wM*VhgNlnCSIE-l*BicSryZFYbtpVKx
rlDIZFKCtykQXIFpt?zlyHiKwmw?KZNSwMS*Zl?TZkGqErpgVEvqSBTN
nKhhtYp*TrDbCg-EAbpYWeM-HsSsikDQyLQMBExCihvIeGEkeeaLYhSb
HVsTqwSzZrAgpmySDNaP*hqezMmzeRfDeFZaRRqPtdlkRvTEHWaNF*fW
lgfxbNnwhqKkslbWVFV?IYtyzcGxqrYMR*bX*MWiFdLiFyHBfewsMgxN
WdgtCFkwZHHexB*nINanE?AFAQ?drSG*xdkkEZsLvpMbYyaTwcsGmKwy
MTtwQLgcNf?-GSmXvLbHmTpgBTPXTiVwwDgHkHgztsKkpxMAd*TYImIW
eLeVyifL

>l
xyVIPHSMEt-V*rCv-rsthbAYEWVNvvWFAtELZZItrPybcFxIHfd?DRHw
p*fkGZxiaBDxFAINYl*YlLwPWfbpfcvgLvBfdrT*e-ENYil*mVkvmFMN
ApfKix-bAebwwRSGXaVF?ReGRrMFARdvlIHcqEmSXE*khKalYgnqIhCy
fDNqnZsEsNlEEIPIrZklSCNK-?*mmDDZnfQZpZQCrSLrpP?y-yG*WrNW
wRw?-HzxzlYpZRlbfaefeeGYYYkxqvNp*zlFbVqLtzYbZYnABQrQz?kQ
wh*WGbXDN*sXECEygEBwLrylwsrdGiDHNRdGS-nprNXrLnbLCXmcyiKx
QLBQsbSFewyEeKlmNghKVRrZFyFb*lRmXsKA-f*PIpBLzebitNZYLl*K
KdQtgHfvpRWI?vtqtNFRmyvtQXnFwbAnIAXRm*ADvVzIfwCKweyCK*YX
yeKDLTvXKyzVEiNmK?W-nvLs*?ldnnRylAsfghvDIFK*yTsNAfadSMef
eAymBe?h

>m
hb-t*LxhiqptnHX-eQayxaVsMzyPnmsTxhBMgBNXhIfRzYAwcWQSqHdM
WHdkvKYNbLhvvAlfmlsTnzIQ?XipsYhIEcrelCqlhSksMiC-TVftPGgT
C*cTAmv*LkRGEaMGbBVAFyfQDsrBA*aqFXPwwYtCCwhSLgCVnppHCWeF
saH-IhlBFhl?lQ--MiCr?V*fkCQmDRCaHKffdZtr-yGRi?etfSmIZI?D
gRVlYtIxBbzbZeHYEHaiaCiPTSyfNiDewPp?GcWCRCiGtvABllrgPDbZ
BDizMKZnsFX-KB?wiZqa-btyTATYBegHVmLVAVPYPvdkLWTQTXtkxIVP
GXHFfAIWpCEkFPfhxHyMwDxtTmbxmihGq*WHmfyCniX?EtYSGNfpnLxi
PerxcDQhxYDIcCQLbilIyAThPFqCCXeGytXkgnVwIkptddIlw*nYITwW
CtMXybHEslNLk?fK**AFqBTQeyiKCfYBACAAiGZwrxxirEBfCgP?Zsmg
DFGEwXBB

>n
lQqDMRndBArwrnyDMFhtDlLM?crYtkYmAHHqaXT-RkbNQxhhMtmXyYSx
VGLhreqdvwvSVAGznlNKIHcLX-atBZLkhabDXAhxeAMPyGA-ChmqzRgX
AAD?YkXZD*WRyaMcwBWPvQVrDiFQcEZgrsPlYyfCFqXsSVPhWxVqpmDy
TYBgFXGvZhl-RnTXmXFlQkw?yzVdcvc*KzsZEC*Wf?MYHceXMEXttIGN
eZb*vFafqDqLVIVBA-nKe?arTVSCBNIHCPatziIqkzGsIWzEllzvDlxS
HfQFvWMNitKXeytsDddPRkq-dw-dteFNexLLggiPaIYCRSbwFht?ZI?c
c*?QHISweCykfyLhAyfxsLPKLmYIgbckB*KqcfcDX?tzkXHeIDabBEdF
bkyMQcZvyhkrFflGIdMNbcnFBLyXdXqNiFpLmxBsvmxVVNBKzfsxagKC
nMWQVprHVmhFCtqaRWCBQ*tpft??lyWfaaAwXl-DxFSN*YTAfME?Bwi*
gbX-ChZh

>o
HhPiTngnKhBItWtDfezSLdePWpzaVFyvqEftLMtq?-*AZRwTWCew*RyH
RGgAIDCskXgskpnvYyCmlmgbAyPRw*IklvbdXsvdZdasexwBEFnELqNc
QEQlZDtMtScSyaSipGqn-RXQD*srtW-NEtnIGEwCBCxakWrIkxbfIIIc
Kh*sVSMZThwcHnTdyrWyPdlqghdDnbwkkKQ*NZVVyCYI?DEdeEEpeCL-
nLdCVW*MWCxRtEAWBXvBcCxsTVllmi-mTIbpxIbDqIix??XPRfbyzGav
kHt?NClHibXSSLtylNGMsrVqiAXqQHWr*-CGerqqhvY-mnBgEct?ErRQ
bSlSq*QihCIKfPCT?gBNVIkbzaIG*mXDpKKAhfcyFXCsg?WDLSgyDfWy
WR*yeRhYXxVVYVZZkWWMb?IFtgnNrmFiFGv?PWhevqVpQQDKZkzAMsny
MtL*iTnpyfMqpGq-hHAkeaLlnlEVcnLQKD*pENXDKraV*pKqFMVtQMig
TkgvYhIK

>p
PkSKIPpeNRheawRmfkRtsBxXhkHXGKYdgFEtmkyX?GeXzzacbYaFytKw
ngtkvFymkwBpnRycWAtx-Iz?SNPfdwrDDiRDlCfXgmHyH-Y-tKZiTGKT
zARlxdbH*XQ*P*fciQZM?mPKKNLLiBZHwKmQMBTIYvWmhIr-LZ?AaQAX
MlgfPElDWizAfpypvakeQCbEtRgRcKMWNPqHNeTdTiwl?ZTwflCEFelx
TVZLtZRxZF*bKXa?Ag?Zk-tATbyHFenAgwcN*wKbNniCP-n-StrFzgkm
QhyPEhrFly-XQiCycZlPFilriILeISChLRHqHFiPx*hGqnAEHmKWMVRC
MshQGaYwgnybeEC?embKD-sgXazxgyYpQzppQeKvFlrktW-vTwlNDrYS
bpMydlDyp?AVYmPSzDtPigi*tFnfTmAQbI-kSty?MqmtBTeBADKPpkbN
wdhyYTaHSHL-LiIScqAK*CmQctsnhyhcawfekvvElYBQ*ADLq?KCcXLg
lxckeQwl