1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
|
#! /usr/bin/env python
##############################################################################
## DendroPy Phylogenetic Computing Library.
##
## Copyright 2010-2015 Jeet Sukumaran and Mark T. Holder.
## All rights reserved.
##
## See "LICENSE.rst" for terms and conditions of usage.
##
## If you use this work or any portion thereof in published work,
## please cite it as:
##
## Sukumaran, J. and M. T. Holder. 2010. DendroPy: a Python library
## for phylogenetic computing. Bioinformatics 26: 1569-1571.
##
##############################################################################
"""
Various data structures.
"""
def get_calling_code_info(stack_level):
frame = inspect.stack()[stacklevel]
filename = inspect.getfile(frame[0])
lineno = inspect.getlineno(frame[0])
return filename, lineno
def dump_stack(out=None):
if out is None:
out = sys.stderr
for frame, filename, line_num, func, source_code, source_index in inspect.stack()[2:]:
if source_code is None:
out.write("{}: {}\n".format(filename, line_num))
else:
out.write("{}: {}: {}\n".format(filename, line_num, source_code[source_index].strip()))
|
