1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
|
#! /usr/bin/env python
##############################################################################
## DendroPy Phylogenetic Computing Library.
##
## Copyright 2010-2015 Jeet Sukumaran and Mark T. Holder.
## All rights reserved.
##
## See "LICENSE.rst" for terms and conditions of usage.
##
## If you use this work or any portion thereof in published work,
## please cite it as:
##
## Sukumaran, J. and M. T. Holder. 2010. DendroPy: a Python library
## for phylogenetic computing. Bioinformatics 26: 1569-1571.
##
##############################################################################
"""
Environmental variables controlling DendroPy behavior (mostly for
development/testing usage).
"""
FAIL_INCOMPLETE_TESTS_ENVAR = "DENDROPY_FAIL_INCOMPLETE_TESTS"
LOGGING_LEVEL_ENVAR = "DENDROPY_LOGGING_LEVEL"
LOGGING_FORMAT_ENVAR = "DENDROPY_LOGGING_FORMAT"
DENDROPY_PAUP_PATH_ENVAR = "DENDROPY_PAUP_EXECUTABLE_PATH"
DENDROPY_RSCRIPT_PATH_ENVAR = "DENDROPY_RSCRIPT_EXECUTABLE_PATH"
# error: Turn the warning into an exception.
# ignore: Discard the warning.
# always: Always emit a warning.
# default: Print the warning the first time it is generated from each location.
# module: Print the warning the first time it is generated from each module.
# once: Print the warning the first time it is generated.
DEPRECATION_WARNING_FILTER = "DENDROPY_DEPRECATION_WARNINGS"
|
