1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114
|
# Ignore very-long-line-length-in-source-file for data files
python-dendropy source: very-long-line-length-in-source-file 1072 > 512 [tests/data/trees/cetaceans.mb.strict-clock.mcmc.weighted-01.trees:*]
python-dendropy source: very-long-line-length-in-source-file 1072 > 512 [tests/data/trees/cetaceans.mb.strict-clock.mcmc.weighted-03.trees:*]
python-dendropy source: very-long-line-length-in-source-file 1073 > 512 [tests/data/trees/cetaceans.mb.strict-clock.mcmc.weighted-02.trees:*]
python-dendropy source: very-long-line-length-in-source-file 11486 > 512 [tests/data/trees/primates.beast.mcct.medianh.tre:*]
python-dendropy source: very-long-line-length-in-source-file 11492 > 512 [tests/data/trees/primates.beast.mcct.meanh.tre:*]
python-dendropy source: very-long-line-length-in-source-file 1160 > 512 [tests/data/trees/primates.beast.mcmc.trees:*]
python-dendropy source: very-long-line-length-in-source-file 12061 > 512 [tests/data/trees/APG_Angiosperms.newick:*]
python-dendropy source: very-long-line-length-in-source-file 120623 > 512 [tests/data/trees/Bininda-emonds_2007_mammals.newick:*]
python-dendropy source: very-long-line-length-in-source-file 1249 > 512 [tests/data/trees/pythonidae.random.bd0301.midpoint-rooted.tre:*]
python-dendropy source: very-long-line-length-in-source-file 1290 > 512 [tests/data/trees/prune_unrooted.paup-pruned.nex:*]
python-dendropy source: very-long-line-length-in-source-file 1291 > 512 [tests/data/trees/incomplete_leaves_unrooted.paup-pruned.nex:*]
python-dendropy source: very-long-line-length-in-source-file 1299764 > 512 [tests/data/trees/Smith_2001_angiosperms.newick:*]
python-dendropy source: very-long-line-length-in-source-file 1299782 > 512 [tests/data/trees/Smith_2001_angiosperms.nexus:*]
python-dendropy source: very-long-line-length-in-source-file 1333 > 512 [tests/data/trees/pythonidae.mle.newick:*]
python-dendropy source: very-long-line-length-in-source-file 1347 > 512 [tests/data/trees/pythonidae.mb.run1.t:*]
python-dendropy source: very-long-line-length-in-source-file 1347 > 512 [tests/data/trees/pythonidae.mb.run4.t:*]
python-dendropy source: very-long-line-length-in-source-file 1348 > 512 [tests/data/trees/pythonidae.mb.run2.t:*]
python-dendropy source: very-long-line-length-in-source-file 1350 > 512 [tests/data/trees/pythonidae.mb.run3.t:*]
python-dendropy source: very-long-line-length-in-source-file 1351 > 512 [tests/data/trees/prune_rooted.dendropy-pruned.nex:*]
python-dendropy source: very-long-line-length-in-source-file 1351 > 512 [tests/data/trees/prune_rooted.paup-pruned.nex:*]
python-dendropy source: very-long-line-length-in-source-file 1351 > 512 [tests/data/trees/pythonidae.lower.mle.nex:*]
python-dendropy source: very-long-line-length-in-source-file 1351 > 512 [tests/data/trees/pythonidae.mle.nex:*]
python-dendropy source: very-long-line-length-in-source-file 1351 > 512 [tests/data/trees/pythonidae.upper.mle.nex:*]
python-dendropy source: very-long-line-length-in-source-file 1365 > 512 [tests/data/trees/incomplete_leaves_rooted.dendropy-pruned.nex:*]
python-dendropy source: very-long-line-length-in-source-file 1366 > 512 [tests/data/trees/incomplete_leaves_rooted.paup-pruned.nex:*]
python-dendropy source: very-long-line-length-in-source-file 1396 > 512 [tests/data/trees/pythonidae.reference-trees.newick:*]
python-dendropy source: very-long-line-length-in-source-file 1401 > 512 [tests/data/trees/incomplete_leaves_unrooted.dendropy-pruned.nex:*]
python-dendropy source: very-long-line-length-in-source-file 1402 > 512 [tests/data/trees/prune_unrooted.dendropy-pruned.nex:*]
python-dendropy source: very-long-line-length-in-source-file 1404 > 512 [tests/data/chars/cetaceans.nex:*]
python-dendropy source: very-long-line-length-in-source-file 1452 > 512 [tests/data/trees/dendropy-test-trees-n33-unrooted-x100a.newick:*]
python-dendropy source: very-long-line-length-in-source-file 1452 > 512 [tests/data/trees/dendropy-test-trees-n33-unrooted-x10a.newick:*]
python-dendropy source: very-long-line-length-in-source-file 1452 > 512 [tests/data/trees/dendropy-test-trees-n33-unrooted-x10b.newick:*]
python-dendropy source: very-long-line-length-in-source-file 1465 > 512 [tests/data/chars/interleaved-charsets-c2.nex:*]
python-dendropy source: very-long-line-length-in-source-file 1470 > 512 [tests/data/trees/dendropy-test-trees-n33-unrooted-x10a.nexus:*]
python-dendropy source: very-long-line-length-in-source-file 1470 > 512 [tests/data/trees/dendropy-test-trees-n33-unrooted-x10b.nexus:*]
python-dendropy source: very-long-line-length-in-source-file 1471 > 512 [tests/data/trees/dendropy-test-trees-n33-unrooted-x100a.nexus:*]
python-dendropy source: very-long-line-length-in-source-file 1535 > 512 [tests/data/trees/feb032009.trees.nexus:*]
python-dendropy source: very-long-line-length-in-source-file 1535 > 512 [tests/data/trees/issue_mth_2009-02-03.rooted.nexus:*]
python-dendropy source: very-long-line-length-in-source-file 1535 > 512 [tests/data/trees/issue_mth_2009-02-03.unrooted.nexus:*]
python-dendropy source: very-long-line-length-in-source-file 1547 > 512 [tests/data/trees/pythonidae.random.bd0301.tre:*]
python-dendropy source: very-long-line-length-in-source-file 1551 > 512 [tests/data/trees/feb032009.trees.newick:*]
python-dendropy source: very-long-line-length-in-source-file 1564 > 512 [tests/data/chars/interleaved-charsets-c3.nex:*]
python-dendropy source: very-long-line-length-in-source-file 1575 > 512 [tests/data/trees/pythonidae.reference-trees.no-taxa-no-translate-block.nexus:*]
python-dendropy source: very-long-line-length-in-source-file 1603 > 512 [tests/data/trees/incomplete_leaves_rooted.pre-pruned.nex:*]
python-dendropy source: very-long-line-length-in-source-file 1603 > 512 [tests/data/trees/prune_rooted.pre-pruned.nex:*]
python-dendropy source: very-long-line-length-in-source-file 1603 > 512 [tests/data/trees/pythonidae.random.bd0301.randomly-rooted.tre:*]
python-dendropy source: very-long-line-length-in-source-file 16294 > 512 [tests/data/mixed/GEBA.mixed.nexus:*]
python-dendropy source: very-long-line-length-in-source-file 16294 > 512 [tests/data/trees/GEBA.tree.nexus:*]
python-dendropy source: very-long-line-length-in-source-file 1702 > 512 [tests/data/trees/incomplete_leaves_unrooted.pre-pruned.nex:*]
python-dendropy source: very-long-line-length-in-source-file 1702 > 512 [tests/data/trees/prune_unrooted.pre-pruned.nex:*]
python-dendropy source: very-long-line-length-in-source-file 1706 > 512 [tests/data/chars/interleaved-charsets-all.nex:*]
python-dendropy source: very-long-line-length-in-source-file 1708 > 512 [tests/data/chars/interleaved-charsets-c1.nex:*]
python-dendropy source: very-long-line-length-in-source-file 1717 > 512 [tests/data/trees/dendropy-test-trees-multifurcating-rooted.newick:*]
python-dendropy source: very-long-line-length-in-source-file 1717 > 512 [tests/data/trees/dendropy-test-trees-multifurcating-unrooted.newick:*]
python-dendropy source: very-long-line-length-in-source-file 1734 > 512 [tests/data/trees/dendropy-test-trees-multifurcating-unrooted.nexus:*]
python-dendropy source: very-long-line-length-in-source-file 1735 > 512 [tests/data/trees/dendropy-test-trees-multifurcating-rooted.nexus:*]
python-dendropy source: very-long-line-length-in-source-file 1842 > 512 [tests/data/trees/rana.trees.nexus:*]
python-dendropy source: very-long-line-length-in-source-file 2028 > 512 [tests/data/chars/pythonidae_continuous.chars.txt:*]
python-dendropy source: very-long-line-length-in-source-file 2037 > 512 [tests/data/chars/pythonidae_continuous.chars.nexus:*]
python-dendropy source: very-long-line-length-in-source-file 20474 > 512 [tests/data/trees/pythonidae.beast.summary.tre:*]
python-dendropy source: very-long-line-length-in-source-file 21332 > 512 [tests/data/trees/APG_Angiosperms.nexus:*]
python-dendropy source: very-long-line-length-in-source-file 2202 > 512 [tests/data/other/hiv1.distances.csv:1*]
python-dendropy source: very-long-line-length-in-source-file 2205 > 512 [tests/data/other/hiv1.node-to-node-dists.csv:*]
python-dendropy source: very-long-line-length-in-source-file 2205 > 512 [tests/data/other/hiv1.unweighted.node-to-node-dists.csv:*]
python-dendropy source: very-long-line-length-in-source-file 2685 > 512 [tests/data/trees/hiv1.newick:*]
python-dendropy source: very-long-line-length-in-source-file 2717 > 512 [tests/data/chars/pythonidae.chars.fasta:*]
python-dendropy source: very-long-line-length-in-source-file 2742 > 512 [tests/data/chars/pythonidae.chars.txt:*]
python-dendropy source: very-long-line-length-in-source-file 2745 > 512 [tests/data/mixed/reference_single_taxonset_dataset.nex:*]
python-dendropy source: very-long-line-length-in-source-file 2749 > 512 [tests/data/chars/pythonidae.chars.phylip:*]
python-dendropy source: very-long-line-length-in-source-file 2753 > 512 [tests/data/chars/pythonidae.chars.nexus:*]
python-dendropy source: very-long-line-length-in-source-file 311324 > 512 [tests/data/trees/Jetz_et_al_2012_Aves.sample.tree.nexus:*]
python-dendropy source: very-long-line-length-in-source-file 3181 > 512 [tests/data/trees/pythonidae.reference-trees.taxon-numbers-only.newick:*]
python-dendropy source: very-long-line-length-in-source-file 3227 > 512 [tests/data/trees/pythonidae.reference-trees.nexus:*]
python-dendropy source: very-long-line-length-in-source-file 3227 > 512 [tests/data/trees/pythonidae.reference-trees.no-taxa-block.nexus:*]
python-dendropy source: very-long-line-length-in-source-file 3241 > 512 [tests/data/trees/pythonidae.beast.mcmc.trees:*]
python-dendropy source: very-long-line-length-in-source-file 36595 > 512 [tests/data/trees/GEBA.tree.newick:*]
python-dendropy source: very-long-line-length-in-source-file 4245 > 512 [tests/data/trees/hiv1.nexus:*]
python-dendropy source: very-long-line-length-in-source-file 45796 > 512 [tests/data/trees/dendropy-test-trees-n33-unrooted-annotated-x10a.newick:*]
python-dendropy source: very-long-line-length-in-source-file 45814 > 512 [tests/data/trees/dendropy-test-trees-n33-unrooted-annotated-x10a.nexus:*]
python-dendropy source: very-long-line-length-in-source-file 463080 > 512 [tests/data/trees/Jetz_et_al_2012_Aves.sample.tree.newick:*]
python-dendropy source: very-long-line-length-in-source-file 516 > 512 [tests/data/chars/standard-test-chars-protein.relaxed.phylip:*]
python-dendropy source: very-long-line-length-in-source-file 518 > 512 [tests/data/chars/standard-test-chars-protein.basic.nexus:*]
python-dendropy source: very-long-line-length-in-source-file 518 > 512 [tests/data/chars/standard-test-chars-protein.matchchar.nexus:*]
python-dendropy source: very-long-line-length-in-source-file 518 > 512 [tests/data/chars/standard-test-chars-protein.simple.nexus:*]
python-dendropy source: very-long-line-length-in-source-file 551 > 512 [tests/data/trees/bird_orders.newick:*]
python-dendropy source: very-long-line-length-in-source-file 578 > 512 [tests/data/trees/dendropy-test-trees-n14-unrooted-treeshapes.newick:*]
python-dendropy source: very-long-line-length-in-source-file 57978 > 512 [tests/data/trees/dendropy-test-trees-multifurcating-rooted-annotated.newick:*]
python-dendropy source: very-long-line-length-in-source-file 57996 > 512 [tests/data/trees/dendropy-test-trees-multifurcating-rooted-annotated.nexus:*]
python-dendropy source: very-long-line-length-in-source-file 597 > 512 [tests/data/trees/dendropy-test-trees-n14-unrooted-treeshapes.nexus:*]
python-dendropy source: very-long-line-length-in-source-file 635 > 512 [tests/data/trees/pythonidae.mlboots.newick.tre:*]
python-dendropy source: very-long-line-length-in-source-file 644 > 512 [tests/data/other/pythonidae.mle.unweighted.pdm.csv:*]
python-dendropy source: very-long-line-length-in-source-file 656 > 512 [tests/data/trees/pythonidae.mlboots.nexus.tre:*]
python-dendropy source: very-long-line-length-in-source-file 659 > 512 [tests/data/trees/cetaceans.mb.no-clock.mcmc.trees:*]
python-dendropy source: very-long-line-length-in-source-file 674 > 512 [tests/data/trees/cetaceans.mb.strict-clock.mcmc.trees:*]
python-dendropy source: very-long-line-length-in-source-file 6918 > 512 [tests/data/chars/GEBA.chars.nexus:*]
python-dendropy source: very-long-line-length-in-source-file 714 > 512 [tests/data/chars/primates.chars.subsets-coding.nexus:*]
python-dendropy source: very-long-line-length-in-source-file 716 > 512 [tests/data/trees/deepcoal1.nex:*]
python-dendropy source: very-long-line-length-in-source-file 763 > 512 [tests/data/chars/orti.nex:*]
python-dendropy source: very-long-line-length-in-source-file 8023 > 512 [tests/data/chars/actinopterygii.chars.nexus:*]
python-dendropy source: very-long-line-length-in-source-file 825 > 512 [tests/data/other/pythonidae.mle.node-to-node-dists.csv:*]
python-dendropy source: very-long-line-length-in-source-file 844 > 512 [tests/data/other/laurasiatherian.distances.ml.csv:*]
python-dendropy source: very-long-line-length-in-source-file 850 > 512 [tests/data/trees/pythonidae.mb.con:*]
python-dendropy source: very-long-line-length-in-source-file 86729 > 512 [tests/data/trees/Bininda-emonds_2007_mammals.nexus:*]
python-dendropy source: very-long-line-length-in-source-file 883 > 512 [tests/data/other/pythonidae.mle.weighted.pdm.csv:*]
python-dendropy source: very-long-line-length-in-source-file 899 > 512 [tests/data/chars/primates.chars.fasta:*]
python-dendropy source: very-long-line-length-in-source-file 910 > 512 [tests/data/trees/pythonidae.mle.numbered-nodes.newick:*]
python-dendropy source: very-long-line-length-in-source-file 919 > 512 [tests/data/chars/primates.chars.csv:*]
python-dendropy source: very-long-line-length-in-source-file 920 > 512 [tests/data/chars/primates.chars.nexus:*]
python-dendropy source: very-long-line-length-in-source-file 920 > 512 [tests/data/chars/primates.chars.simple.nexus:*]
python-dendropy source: very-long-line-length-in-source-file 920 > 512 [tests/data/chars/primates.chars.subsets-all.nexus:*]
python-dendropy source: very-long-line-length-in-source-file 977 > 512 [tests/data/trees/cetaceans.mb.no-clock.mcmc.weighted-01.trees:*]
python-dendropy source: very-long-line-length-in-source-file 977 > 512 [tests/data/trees/cetaceans.mb.no-clock.mcmc.weighted-02.trees:*]
python-dendropy source: very-long-line-length-in-source-file 977 > 512 [tests/data/trees/cetaceans.mb.no-clock.mcmc.weighted-03.trees:*]
|