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#!/bin/bash
set -e
pkg=sumtrees
export LC_ALL=C.UTF-8
if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
fi
cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"
cd "${AUTOPKGTEST_TMP}"
gunzip -r *
# Obtained from `sumtrees --usage-examples`
sumtrees --summary-target consensus \
--min-clade-freq=0.95 \
--edges mean-length \
--burnin=200 \
--support-as-labels \
--output=pythonidae_result.tre \
pythonidae.mlboots.newick.tre pythonidae.random.bd0301.midpoint-rooted.tre pythonidae.random.bd0301.tre
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