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[build-system]
requires = ["setuptools >= 78", "setuptools_scm >= 6.2", "Cython >= 3.1"]
build-backend = "setuptools.build_meta"
[project]
name = "dnaio"
authors = [
{name = "Marcel Martin", email = "marcel.martin@scilifelab.se"},
{name = "Ruben Vorderman", email = "r.h.p.vorderman@lumc.nl"}
]
description = "Read and write FASTA and FASTQ files efficiently"
readme = "README.rst"
license = "MIT"
classifiers = [
"Development Status :: 5 - Production/Stable",
"Intended Audience :: Science/Research",
"Programming Language :: Cython",
"Programming Language :: Python :: 3",
"Topic :: Scientific/Engineering :: Bio-Informatics"
]
requires-python = ">=3.10"
dependencies = [
"xopen >= 1.4.0"
]
dynamic = ["version"]
[project.optional-dependencies]
dev = [
"Cython",
"pytest"
]
[project.urls]
"Homepage" = "https://dnaio.readthedocs.io/"
"Changelog" = "https://dnaio.readthedocs.io/en/latest/changes.html"
"Repository" = "https://github.com/marcelm/dnaio/"
[tool.setuptools.exclude-package-data]
dnaio = ["*.pyx"]
[tool.setuptools_scm]
write_to = "src/dnaio/_version.py"
[tool.pytest.ini_options]
testpaths = ["tests"]
[tool.cibuildwheel.windows.environment]
CFLAGS = "-O3 -DNDEBUG"
[tool.cibuildwheel.macos.environment]
CFLAGS = "-O3 -DNDEBUG"
[tool.cibuildwheel.linux.environment]
CFLAGS = "-O3 -DNDEBUG"
[tool.cibuildwheel]
test-requires = "pytest"
test-command = ["cd {project}", "pytest tests"]
build-verbosity = 1
[[tool.cibuildwheel.overrides]]
select = "*-win*"
test-command = ["cd /d {project}", "pytest tests"]
[tool.mypy]
warn_unused_configs = true
warn_redundant_casts = true
warn_unused_ignores = true
[tool.coverage.report]
precision = 1
exclude_also = [
"def __repr__",
"@overload",
"if TYPE_CHECKING:",
]
[tool.coverage.run]
branch = true
parallel = true
include = [
"*/site-packages/dnaio/*",
"tests/*",
]
[tool.coverage.paths]
source = [
"src/",
"*/site-packages/",
]
|
