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|
import argparse
from easydev import SmartFormatter
class Options(argparse.ArgumentParser):
def __init__(self, prog="test"):
usage = """standalone test"""
description = """blabla"""
super(Options, self).__init__(usage=usage, prog=prog, description=description, formatter_class=SmartFormatter)
self.add_argument(
"--config-params",
dest="config_params",
type=str,
help="""FORMAT|Overwrite any field in the config file by using
the following convention. A config file is in YAML format
and has a hierarchy of parametesr. For example:
samples:
file1: R1.fastq.gz
file2: R2.fastq.gz
bwa_mem_phix:
mem:
threads: 2
""",
)
def test():
options = Options()
try:
options.parse_args(["--help"])
except:
pass
|
