File: molecules_jcesr.py

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from typing import List, Optional
from pydantic import BaseModel, Field
from pymatgen.core.periodic_table import Element
from pymatgen.core.structure import Molecule


class MoleculesDoc(BaseModel):
    """
    Molecules relevant to battery electrolytes.
    """

    elements: Optional[List[Element]] = Field(
        None,
        description="List of elements in the molecule.",
    )

    nelements: Optional[int] = Field(
        None,
        description="Number of elements in the molecule.",
    )

    EA: Optional[float] = Field(
        None,
        description="Electron affinity of the molecule in eV.",
    )

    IE: Optional[float] = Field(
        None,
        description="Ionization energy of the molecule in eV.",
    )

    charge: Optional[int] = Field(
        None,
        description="Charge of the molecule in +e.",
    )

    pointgroup: Optional[str] = Field(
        None,
        description="Point group of the molecule in Schoenflies notation.",
    )

    smiles: Optional[str] = Field(
        None,
        description="The simplified molecular input line-entry system (SMILES) \
            representation of the molecule.",
    )

    task_id: Optional[str] = Field(
        None,
        description="Materials Project molecule ID. This takes the form mol-*****.",
    )

    molecule: Optional[Molecule] = Field(
        None,
        description="Pymatgen molecule object.",
    )

    formula_pretty: Optional[str] = Field(
        None,
        description="Chemical formula of the molecule.",
    )

    svg: Optional[str] = Field(
        None,
        description="String representation of the SVG image of the molecule.",
    )