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/*
* Copyright 2008-2009 NVIDIA Corporation
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
/*! \file csr_matrix.h
* \brief Compressed Sparse Row matrix format.
*/
#pragma once
#include <cusp/detail/config.h>
#include <cusp/array1d.h>
#include <cusp/format.h>
#include <cusp/detail/matrix_base.h>
namespace cusp
{
// forward definition
template <typename Array1, typename Array2, typename Array3, typename IndexType, typename ValueType, typename MemorySpace> class csr_matrix_view;
/*! \addtogroup sparse_matrices Sparse Matrices
*/
/*! \addtogroup sparse_matrix_containers Sparse Matrix Containers
* \ingroup sparse_matrices
* \{
*/
/*! \p csr_matrix : Compressed Sparse Row matrix container
*
* \tparam IndexType Type used for matrix indices (e.g. \c int).
* \tparam ValueType Type used for matrix values (e.g. \c float).
* \tparam MemorySpace A memory space (e.g. \c cusp::host_memory or cusp::device_memory)
*
* \note The matrix entries within the same row must be sorted by column index.
* \note The matrix should not contain duplicate entries.
*
* The following code snippet demonstrates how to create a 4-by-3
* \p csr_matrix on the host with 6 nonzeros and then copies the
* matrix to the device.
*
* \code
* #include <cusp/csr_matrix.h>
* ...
*
* // allocate storage for (4,3) matrix with 4 nonzeros
* cusp::csr_matrix<int,float,cusp::host_memory> A(4,3,6);
*
* // initialize matrix entries on host
* A.row_offsets[0] = 0; // first offset is always zero
* A.row_offsets[1] = 2;
* A.row_offsets[2] = 2;
* A.row_offsets[3] = 3;
* A.row_offsets[4] = 6; // last offset is always num_entries
*
* A.column_indices[0] = 0; A.values[0] = 10;
* A.column_indices[1] = 2; A.values[1] = 20;
* A.column_indices[2] = 2; A.values[2] = 30;
* A.column_indices[3] = 0; A.values[3] = 40;
* A.column_indices[4] = 1; A.values[4] = 50;
* A.column_indices[5] = 2; A.values[5] = 60;
*
* // A now represents the following matrix
* // [10 0 20]
* // [ 0 0 0]
* // [ 0 0 30]
* // [40 50 60]
*
* // copy to the device
* cusp::csr_matrix<int,float,cusp::device_memory> A = B;
* \endcode
*
*/
template <typename IndexType, typename ValueType, class MemorySpace>
class csr_matrix : public detail::matrix_base<IndexType,ValueType,MemorySpace,cusp::csr_format>
{
typedef cusp::detail::matrix_base<IndexType,ValueType,MemorySpace,cusp::csr_format> Parent;
public:
/*! rebind matrix to a different MemorySpace
*/
template<typename MemorySpace2>
struct rebind { typedef cusp::csr_matrix<IndexType, ValueType, MemorySpace2> type; };
/*! type of row offsets indices array
*/
typedef typename cusp::array1d<IndexType, MemorySpace> row_offsets_array_type;
/*! type of column indices array
*/
typedef typename cusp::array1d<IndexType, MemorySpace> column_indices_array_type;
/*! type of values array
*/
typedef typename cusp::array1d<ValueType, MemorySpace> values_array_type;
/*! equivalent container type
*/
typedef typename cusp::csr_matrix<IndexType, ValueType, MemorySpace> container;
/*! equivalent view type
*/
typedef typename cusp::csr_matrix_view<typename row_offsets_array_type::view,
typename column_indices_array_type::view,
typename values_array_type::view,
IndexType, ValueType, MemorySpace> view;
/*! equivalent const_view type
*/
typedef typename cusp::csr_matrix_view<typename row_offsets_array_type::const_view,
typename column_indices_array_type::const_view,
typename values_array_type::const_view,
IndexType, ValueType, MemorySpace> const_view;
/*! Storage for the row offsets of the CSR data structure. Also called the "row pointer" array.
*/
row_offsets_array_type row_offsets;
/*! Storage for the column indices of the CSR data structure.
*/
column_indices_array_type column_indices;
/*! Storage for the nonzero entries of the CSR data structure.
*/
values_array_type values;
/*! Construct an empty \p csr_matrix.
*/
csr_matrix() {}
/*! Construct a \p csr_matrix with a specific shape and number of nonzero entries.
*
* \param num_rows Number of rows.
* \param num_cols Number of columns.
* \param num_entries Number of nonzero matrix entries.
*/
csr_matrix(size_t num_rows, size_t num_cols, size_t num_entries)
: Parent(num_rows, num_cols, num_entries),
row_offsets(num_rows + 1), column_indices(num_entries), values(num_entries) {}
/*! Construct a \p csr_matrix from another matrix.
*
* \param matrix Another sparse or dense matrix.
*/
template <typename MatrixType>
csr_matrix(const MatrixType& matrix);
/*! Resize matrix dimensions and underlying storage
*/
void resize(size_t num_rows, size_t num_cols, size_t num_entries)
{
Parent::resize(num_rows, num_cols, num_entries);
row_offsets.resize(num_rows + 1);
column_indices.resize(num_entries);
values.resize(num_entries);
}
/*! Swap the contents of two \p csr_matrix objects.
*
* \param matrix Another \p csr_matrix with the same IndexType and ValueType.
*/
void swap(csr_matrix& matrix)
{
Parent::swap(matrix);
row_offsets.swap(matrix.row_offsets);
column_indices.swap(matrix.column_indices);
values.swap(matrix.values);
}
/*! Assignment from another matrix.
*
* \param matrix Another sparse or dense matrix.
*/
template <typename MatrixType>
csr_matrix& operator=(const MatrixType& matrix);
}; // class csr_matrix
/*! \}
*/
/*! \addtogroup sparse_matrix_views Sparse Matrix Views
* \ingroup sparse_matrices
* \{
*/
/*! \p csr_matrix_view : Compressed Sparse Row matrix view
*
* \tparam Array1 Type of \c row_offsets array view
* \tparam Array2 Type of \c column_indices array view
* \tparam Array3 Type of \c values array view
* \tparam IndexType Type used for matrix indices (e.g. \c int).
* \tparam ValueType Type used for matrix values (e.g. \c float).
* \tparam MemorySpace A memory space (e.g. \c cusp::host_memory or cusp::device_memory)
*
*/
template <typename Array1,
typename Array2,
typename Array3,
typename IndexType = typename Array1::value_type,
typename ValueType = typename Array3::value_type,
typename MemorySpace = typename cusp::minimum_space<typename Array1::memory_space, typename Array2::memory_space, typename Array3::memory_space>::type >
class csr_matrix_view : public cusp::detail::matrix_base<IndexType,ValueType,MemorySpace,cusp::csr_format>
{
typedef cusp::detail::matrix_base<IndexType,ValueType,MemorySpace,cusp::csr_format> Parent;
public:
typedef Array1 row_offsets_array_type;
typedef Array2 column_indices_array_type;
typedef Array3 values_array_type;
/*! equivalent container type
*/
typedef typename cusp::csr_matrix<IndexType, ValueType, MemorySpace> container;
/*! equivalent view type
*/
typedef typename cusp::csr_matrix_view<Array1, Array2, Array3, IndexType, ValueType, MemorySpace> view;
/*! Storage for the row offsets of the CSR data structure. Also called the "row pointer" array.
*/
row_offsets_array_type row_offsets;
/*! Storage for the column indices of the CSR data structure.
*/
column_indices_array_type column_indices;
/*! Storage for the nonzero entries of the CSR data structure.
*/
values_array_type values;
// construct empty view
csr_matrix_view(void)
: Parent() {}
// construct from existing CSR matrix or view
template <typename Matrix>
csr_matrix_view(Matrix& A)
: Parent(A),
row_offsets(A.row_offsets),
column_indices(A.column_indices),
values(A.values) {}
// TODO check sizes here
csr_matrix_view(size_t num_rows,
size_t num_cols,
size_t num_entries,
Array1 row_offsets,
Array2 column_indices,
Array3 values)
: Parent(num_rows, num_cols, num_entries),
row_offsets(row_offsets),
column_indices(column_indices),
values(values) {}
/*! Resize matrix dimensions and underlying storage
*/
void resize(size_t num_rows, size_t num_cols, size_t num_entries)
{
Parent::resize(num_rows, num_cols, num_entries);
row_offsets.resize(num_rows + 1);
column_indices.resize(num_entries);
values.resize(num_entries);
}
};
/* Convenience functions */
template <typename Array1,
typename Array2,
typename Array3>
csr_matrix_view<Array1,Array2,Array3>
make_csr_matrix_view(size_t num_rows,
size_t num_cols,
size_t num_entries,
Array1 row_offsets,
Array2 column_indices,
Array3 values)
{
return csr_matrix_view<Array1,Array2,Array3>
(num_rows, num_cols, num_entries,
row_offsets, column_indices, values);
}
template <typename Array1,
typename Array2,
typename Array3,
typename IndexType,
typename ValueType,
typename MemorySpace>
csr_matrix_view<Array1,Array2,Array3,IndexType,ValueType,MemorySpace>
make_csr_matrix_view(const csr_matrix_view<Array1,Array2,Array3,IndexType,ValueType,MemorySpace>& m)
{
return csr_matrix_view<Array1,Array2,Array3,IndexType,ValueType,MemorySpace>(m);
}
template <typename IndexType, typename ValueType, class MemorySpace>
typename csr_matrix<IndexType,ValueType,MemorySpace>::view
make_csr_matrix_view(csr_matrix<IndexType,ValueType,MemorySpace>& m)
{
return make_csr_matrix_view
(m.num_rows, m.num_cols, m.num_entries,
make_array1d_view(m.row_offsets),
make_array1d_view(m.column_indices),
make_array1d_view(m.values));
}
template <typename IndexType, typename ValueType, class MemorySpace>
typename csr_matrix<IndexType,ValueType,MemorySpace>::const_view
make_csr_matrix_view(const csr_matrix<IndexType,ValueType,MemorySpace>& m)
{
return make_csr_matrix_view
(m.num_rows, m.num_cols, m.num_entries,
make_array1d_view(m.row_offsets),
make_array1d_view(m.column_indices),
make_array1d_view(m.values));
}
/*! \}
*/
} // end namespace cusp
#include <cusp/detail/csr_matrix.inl>
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