1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313
|
/*
* Copyright 2008-2009 NVIDIA Corporation
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
/*! \file hyb_matrix.h
* \brief Hybrid ELL/COO matrix format
*/
#pragma once
#include <cusp/detail/config.h>
#include <cusp/array1d.h>
#include <cusp/format.h>
#include <cusp/detail/matrix_base.h>
namespace cusp
{
// Forward definitions
template <typename IndexType, typename ValueType, class MemorySpace> class ell_matrix;
template <typename IndexType, typename ValueType, class MemorySpace> class coo_matrix;
template <typename Matrix1, typename Matrix2, typename IndexType, typename ValueType, class MemorySpace> class hyb_matrix_view;
/*! \addtogroup sparse_matrices Sparse Matrices
*/
/*! \addtogroup sparse_matrix_containers Sparse Matrix Containers
* \ingroup sparse_matrices
* \{
*/
/*! \p hyb_matrix : Hybrid ELL/COO matrix container
*
* The \p hyb_matrix is a combination of the \p ell_matrix and
* \p coo_matrix formats. Specifically, the \p hyb_matrix format
* splits a matrix into two portions, one stored in ELL format
* and one stored in COO format.
*
* While the ELL format is well-suited to vector and SIMD
* architectures, its efficiency rapidly degrades when the number of
* nonzeros per matrix row varies. In contrast, the storage efficiency of
* the COO format is invariant to the distribution of nonzeros per row, and
* the use of segmented reduction makes its performance largely invariant
* as well. To obtain the advantages of both, we combine these
* into a hybrid ELL/COO format.
*
* The purpose of the HYB format is to store the typical number of
* nonzeros per row in the ELL data structure and the remaining entries of
* exceptional rows in the COO format.
*
* \tparam IndexType Type used for matrix indices (e.g. \c int).
* \tparam ValueType Type used for matrix values (e.g. \c float).
* \tparam MemorySpace A memory space (e.g. \c cusp::host_memory or cusp::device_memory)
*
* \note The \p ell_matrix entries must be sorted by column index.
* \note The \p ell_matrix entries within each row should be shifted to the left.
* \note The \p coo_matrix entries must be sorted by row index.
* \note The matrix should not contain duplicate entries.
*
* The following code snippet demonstrates how to create a \p hyb_matrix.
* In practice we usually do not construct the HYB format directly and
* instead convert from a simpler format such as (COO, CSR) into HYB.
*
* \code
* #include <cusp/hyb_matrix.h>
* ...
*
* // allocate storage for (4,3) matrix with 8 nonzeros
* // ELL portion has 5 nonzeros and storage for 2 nonzeros per row
* // COO portion has 3 nonzeros
*
* cusp::hyb_matrix<int, float, cusp::host_memory> A(3, 4, 5, 3, 2);
*
* // Initialize A to represent the following matrix
* // [10 20 30 40]
* // [ 0 50 0 0]
* // [60 0 70 80]
*
* // A is split into ELL and COO parts as follows
* // [10 20 30 40] [10 20 0 0] [ 0 0 30 40]
* // [ 0 50 0 0] = [ 0 50 0 0] + [ 0 0 0 0]
* // [60 0 70 80] [60 0 70 0] [ 0 0 0 80]
*
*
* // Initialize ELL part
*
* // X is used to fill unused entries in the ELL portion of the matrix
* const int X = cusp::ell_matrix<int,float,cusp::host_memory>::invalid_index;
*
* // first row
* A.ell.column_indices(0,0) = 0; A.ell.values(0,0) = 10;
* A.ell.column_indices(0,1) = 1; A.ell.values(0,1) = 20;
*
* // second row
* A.ell.column_indices(1,0) = 1; A.ell.values(1,0) = 50; // shifted to leftmost position
* A.ell.column_indices(1,1) = X; A.ell.values(1,1) = 0; // padding
*
* // third row
* A.ell.column_indices(2,0) = 0; A.ell.values(2,0) = 60;
* A.ell.column_indices(2,1) = 2; A.ell.values(2,1) = 70; // shifted to leftmost position
*
*
* // Initialize COO part
* A.coo.row_indices[0] = 0; A.coo.column_indices[0] = 2; A.coo.values[0] = 30;
* A.coo.row_indices[1] = 0; A.coo.column_indices[1] = 3; A.coo.values[1] = 40;
* A.coo.row_indices[2] = 2; A.coo.column_indices[2] = 3; A.coo.values[2] = 80;
*
* \endcode
*
* \see \p ell_matrix
* \see \p coo_matrix
*/
template <typename IndexType, typename ValueType, class MemorySpace>
class hyb_matrix : public detail::matrix_base<IndexType,ValueType,MemorySpace,cusp::hyb_format>
{
typedef cusp::detail::matrix_base<IndexType,ValueType,MemorySpace,cusp::hyb_format> Parent;
public:
/*! rebind matrix to a different MemorySpace
*/
template<typename MemorySpace2>
struct rebind { typedef cusp::hyb_matrix<IndexType, ValueType, MemorySpace2> type; };
/*! equivalent container type
*/
typedef typename cusp::hyb_matrix<IndexType, ValueType, MemorySpace> container;
/*! equivalent view type
*/
typedef typename cusp::hyb_matrix_view<typename cusp::ell_matrix<IndexType,ValueType,MemorySpace>::view,
typename cusp::coo_matrix<IndexType,ValueType,MemorySpace>::view,
IndexType, ValueType, MemorySpace> view;
/*! equivalent const_view type
*/
typedef typename cusp::hyb_matrix_view<typename cusp::ell_matrix<IndexType,ValueType,MemorySpace>::const_view,
typename cusp::coo_matrix<IndexType,ValueType,MemorySpace>::const_view,
IndexType, ValueType, MemorySpace> const_view;
/*! type of \p ELL portion of the HYB structure
*/
typedef cusp::ell_matrix<IndexType,ValueType,MemorySpace> ell_matrix_type;
/*! type of \p COO portion of the HYB structure
*/
typedef cusp::coo_matrix<IndexType,ValueType,MemorySpace> coo_matrix_type;
/*! Storage for the \p ell_matrix portion.
*/
ell_matrix_type ell;
/*! Storage for the \p ell_matrix portion.
*/
coo_matrix_type coo;
/*! Construct an empty \p hyb_matrix.
*/
hyb_matrix() {}
/*! Construct a \p hyb_matrix with a specific shape and separation into ELL and COO portions.
*
* \param num_rows Number of rows.
* \param num_cols Number of columns.
* \param num_ell_entries Number of nonzero matrix entries in the ELL portion.
* \param num_coo_entries Number of nonzero matrix entries in the ELL portion.
* \param num_entries_per_row Maximum number of nonzeros per row in the ELL portion.
* \param alignment Amount of padding used to align the ELL data structure (default 32).
*/
hyb_matrix(IndexType num_rows, IndexType num_cols,
IndexType num_ell_entries, IndexType num_coo_entries,
IndexType num_entries_per_row, IndexType alignment = 32)
: Parent(num_rows, num_cols, num_ell_entries + num_coo_entries),
ell(num_rows, num_cols, num_ell_entries, num_entries_per_row, alignment),
coo(num_rows, num_cols, num_coo_entries) {}
// TODO remove default alignment of 32
/*! Construct a \p hyb_matrix from another matrix.
*
* \param matrix Another sparse or dense matrix.
*/
template <typename MatrixType>
hyb_matrix(const MatrixType& matrix);
/*! Resize matrix dimensions and underlying storage
*/
void resize(IndexType num_rows, IndexType num_cols,
IndexType num_ell_entries, IndexType num_coo_entries,
IndexType num_entries_per_row, IndexType alignment = 32)
{
Parent::resize(num_rows, num_cols, num_ell_entries + num_coo_entries);
ell.resize(num_rows, num_cols, num_ell_entries, num_entries_per_row, alignment);
coo.resize(num_rows, num_cols, num_coo_entries);
}
/*! Swap the contents of two \p hyb_matrix objects.
*
* \param matrix Another \p hyb_matrix with the same IndexType and ValueType.
*/
void swap(hyb_matrix& matrix)
{
Parent::swap(matrix);
ell.swap(matrix.ell);
coo.swap(matrix.coo);
}
/*! Assignment from another matrix.
*
* \param matrix Another sparse or dense matrix.
*/
template <typename MatrixType>
hyb_matrix& operator=(const MatrixType& matrix);
}; // class hyb_matrix
/*! \}
*/
/*! \addtogroup sparse_matrix_views Sparse Matrix Views
* \ingroup sparse_matrices
* \{
*/
/*! \p hyb_matrix_view : Hybrid ELL/COO matrix view
*
* \tparam Matrix1 Type of \c ell
* \tparam Matrix2 Type of \c coo
* \tparam IndexType Type used for matrix indices (e.g. \c int).
* \tparam ValueType Type used for matrix values (e.g. \c float).
* \tparam MemorySpace A memory space (e.g. \c cusp::host_memory or cusp::device_memory)
*
*/
template <typename Matrix1,
typename Matrix2,
typename IndexType = typename Matrix1::index_type,
typename ValueType = typename Matrix1::value_type,
typename MemorySpace = typename cusp::minimum_space<typename Matrix1::memory_space, typename Matrix2::memory_space>::type >
class hyb_matrix_view : public detail::matrix_base<IndexType,ValueType,MemorySpace,cusp::hyb_format>
{
typedef cusp::detail::matrix_base<IndexType,ValueType,MemorySpace,cusp::hyb_format> Parent;
public:
/*! type of \p ELL portion of the HYB structure
*/
typedef Matrix1 ell_matrix_type;
/*! type of \p COO portion of the HYB structure
*/
typedef Matrix2 coo_matrix_type;
/*! equivalent container type
*/
typedef typename cusp::hyb_matrix<IndexType, ValueType, MemorySpace> container;
/*! equivalent view type
*/
typedef typename cusp::hyb_matrix_view<Matrix1, Matrix2, IndexType, ValueType, MemorySpace> view;
/*! View to the \p ELL portion of the HYB structure.
*/
ell_matrix_type ell;
/*! View to the \p COO portion of the HYB structure.
*/
coo_matrix_type coo;
/*! Construct an empty \p hyb_matrix_view.
*/
hyb_matrix_view() {}
template <typename OtherMatrix1, typename OtherMatrix2>
hyb_matrix_view(OtherMatrix1& ell, OtherMatrix2& coo)
: Parent(ell.num_rows, ell.num_cols, ell.num_entries + coo.num_entries), ell(ell), coo(coo) {}
template <typename OtherMatrix1, typename OtherMatrix2>
hyb_matrix_view(const OtherMatrix1& ell, const OtherMatrix2& coo)
: Parent(ell.num_rows, ell.num_cols, ell.num_entries + coo.num_entries), ell(ell), coo(coo) {}
template <typename Matrix>
hyb_matrix_view(Matrix& A)
: Parent(A), ell(A.ell), coo(A.coo) {}
template <typename Matrix>
hyb_matrix_view(const Matrix& A)
: Parent(A), ell(A.ell), coo(A.coo) {}
/*! Resize matrix dimensions and underlying storage
*/
void resize(size_t num_rows, size_t num_cols,
size_t num_ell_entries, size_t num_coo_entries,
size_t num_entries_per_row, size_t alignment = 32)
{
Parent::resize(num_rows, num_cols, num_ell_entries + num_coo_entries);
ell.resize(num_rows, num_cols, num_ell_entries, num_entries_per_row, alignment);
coo.resize(num_rows, num_cols, num_coo_entries);
}
};
/*! \} // end Views
*/
} // end namespace cusp
#include <cusp/detail/hyb_matrix.inl>
|