1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
|
##############################################################################
#
# Copyright (c) 2003-2018 by The University of Queensland
# http://www.uq.edu.au
#
# Primary Business: Queensland, Australia
# Licensed under the Apache License, version 2.0
# http://www.apache.org/licenses/LICENSE-2.0
#
# Development until 2012 by Earth Systems Science Computational Center (ESSCC)
# Development 2012-2013 by School of Earth Sciences
# Development from 2014 by Centre for Geoscience Computing (GeoComp)
#
##############################################################################
import os
Import('*')
from subprocess import PIPE, Popen
haveMPL=False # do we have matplotlib?
haveGD=False # does matplotlib have griddata?
mplmagicversion='0.98.5'
# check for matplotlib
if env['pythoncmd']=='python':
try:
import matplotlib
haveMPL=True
mplversion=matplotlib.__version__
from matplotlib.mlab import griddata
haveGD=True
except ImportError:
pass
else:
# we need to fire up the external command
p=Popen([env['pythoncmd'], '-c', 'from __future__ import print_function;import matplotlib;print(matplotlib.__version__);from matplotlib.mlab import griddata;print("1")'], stdout=PIPE)
try:
mplversion=p.stdout.readline().strip()
if mplversion!='':
haveMPL=True
hgd=p.stdout.readline().strip()
haveGD=True
except IOError:
pass
p.wait()
if not haveMPL:
env['warnings'].append("matplotlib not found, will skip some unit tests")
else:
import sys
if sys.version_info[0] == 3:
mplversion = str(mplversion, 'utf-8')
else:
mplversion = str(mplversion)
if mplversion<mplmagicversion:
env['warnings'].append("matplotlib found, but version too early. Some unit tests will be skipped.")
example_files_allow_mpi = []
example_files_no_mpi = []
example_deps = []
skipped_tests = []
def sortOutExample(name, needsGMSH=False, needsMPL=False, needsMagicMPL=False, needsGD=False, allowsMPI=True):
if needsMagicMPL: needsMPL=True
if needsGD: needsMPL=True
if needsGMSH: allowsMPI=False
if needsGMSH and not env['gmsh']:
skipped_tests.append(name)
return
if (not needsGMSH or env['gmsh']) and (not needsMPL or haveMPL) and (not needsMagicMPL or mplversion>=mplmagicversion) and (not needsGD or haveGD):
if allowsMPI:
example_files_allow_mpi.append(name)
else:
example_files_no_mpi.append(name)
else:
example_deps.append(name)
# these are the release examples in example subdirectory:
#
#_deps is for files which end in .py and are required for
# testing but should not be invoked directly themselves
sortOutExample('usersguide/lid_driven_cavity.py')
sortOutExample('usersguide/mount.py')
sortOutExample('usersguide/heatedblock.py')
sortOutExample('usersguide/helmholtz.py')
sortOutExample('usersguide/fluid.py')
sortOutExample('usersguide/poisson.py')
sortOutExample('usersguide/diffusion.py')
sortOutExample('usersguide/poisson_vtk.py')
sortOutExample('usersguide/darcy.py')
sortOutExample('usersguide/dirac.py')
sortOutExample('usersguide/slip.py')
sortOutExample('usersguide/int_save.py')
sortOutExample('usersguide/wave.py', needsMPL=True)
sortOutExample('usersguide/trapezoid.py', needsGMSH=True, allowsMPI=False)
sortOutExample('usersguide/quad.py', needsGMSH=True)
sortOutExample('usersguide/brick.py', needsGMSH=True)
sortOutExample('usersguide/refine.py', needsGMSH=True)
sortOutExample('usersguide/poisson_matplotlib.py', allowsMPI=False, needsGD=True)
sortOutExample('usersguide/voxet_reader.py')
sortOutExample('geotutorial/steadystate_variablek.py')
sortOutExample('geotutorial/steadystate.py')
sortOutExample('geotutorial/forward_euler.py')
sortOutExample('geotutorial/myfirstscript.py')
sortOutExample('geotutorial/backward_euler.py')
example_deps.append('cookbook/cblib.py')
sortOutExample('cookbook/example01a.py')
sortOutExample('cookbook/example01b.py', needsMPL=True)
sortOutExample('cookbook/example01c.py', needsMPL=True, allowsMPI=False)
sortOutExample('cookbook/example02.py', needsMPL=True, allowsMPI=False)
sortOutExample('cookbook/example03a.py', allowsMPI=False)
sortOutExample('cookbook/example03b.py')
sortOutExample('cookbook/example04a.py', needsGMSH=True)
sortOutExample('cookbook/example04b.py', needsGMSH=True, )
sortOutExample('cookbook/example05a.py', needsGMSH=True, )
sortOutExample('cookbook/example05b.py', needsGMSH=True)
sortOutExample('cookbook/example05c.py', needsGMSH=True, needsMagicMPL=True)
sortOutExample('cookbook/example06.py', needsGMSH=True, needsMagicMPL=True)
sortOutExample('cookbook/example07a.py', needsMagicMPL=True, allowsMPI=False)
sortOutExample('cookbook/example07b.py', needsMagicMPL=True, allowsMPI=False)
sortOutExample('cookbook/example08a.py', needsMagicMPL=True, allowsMPI=False)
sortOutExample('cookbook/example08b.py', needsMagicMPL=True, allowsMPI=False)
sortOutExample('cookbook/example08c.py', needsMagicMPL=True, needsGMSH=True, allowsMPI=False)
sortOutExample('cookbook/example09m.py', needsMagicMPL=True, needsGMSH=True, allowsMPI=False)
sortOutExample('cookbook/example09a.py', needsMagicMPL=True, needsGMSH=True, allowsMPI=False)
#sortOutExample('cookbook/example09b.py', needsMagicMPL=True, needsGMSH=True, allowsMPI=False)
sortOutExample('cookbook/example10a.py', needsMagicMPL=True, allowsMPI=False)
sortOutExample('cookbook/example10b.py', needsMagicMPL=True, allowsMPI=False)
sortOutExample('cookbook/example10m.py', needsMagicMPL=True, needsGMSH=True, allowsMPI=False)
#sortOutExample('cookbook/example10c_0.py', needsMagicMPL=True, needsGMSH=True, allowsMPI=False)
#sortOutExample('cookbook/example10c_1.py', needsMagicMPL=True, needsGMSH=True, allowsMPI=False)
sortOutExample('cookbook/example11a.py', needsMagicMPL=True, allowsMPI=False)
sortOutExample('cookbook/example11b.py', needsMagicMPL=True, allowsMPI=False)
sortOutExample('inversion/create_netcdf.py')
sortOutExample('inversion/grav_ermapper.py')
sortOutExample('inversion/grav_netcdf.py')
sortOutExample('inversion/gravmag_netcdf.py')
sortOutExample('inversion/gravmag_nodriver.py')
sortOutExample('inversion/mag_netcdf.py')
sortOutExample('inversion/plot_ermapper.py', needsMPL=True, allowsMPI=False)
sortOutExample('inversion/plot_netcdf.py', needsMPL=True, allowsMPI=False)
sortOutExample('inversion/dc_forward.py', needsGMSH=True)
sortOutExample('inversion/test_commemi1.py', needsMPL=True, allowsMPI=True)
sortOutExample('inversion/test_commemi4.py', needsMPL=True, allowsMPI=True)
example_deps.append('inversion/content.txt')
example_deps.append('inversion/data/GravitySmall')
example_deps.append('inversion/data/MagneticSmall')
example_deps.append('inversion/data/QLDWestGravity')
example_deps.append('inversion/data/QLDWestMagnetic')
example_deps.append('inversion/data/GravitySmall.ers')
example_deps.append('inversion/data/MagneticSmall.ers')
example_deps.append('inversion/data/QLDWestGravity.ers')
example_deps.append('inversion/data/QLDWestMagnetic.ers')
example_deps.append('inversion/data/GravitySmall.nc')
example_deps.append('inversion/data/MagneticSmall.nc')
example_deps.append('inversion/data/QLDWestGravity.nc')
example_deps.append('inversion/data/QLDWestMagnetic.nc')
example_deps.append('inversion/data/HalfSphere_v1.4.msh')
if len(skipped_tests)>0:
env['warnings'].append("gmsh not available. Skipping tests %s!"%' '.join(skipped_tests))
example_files = example_files_allow_mpi + example_files_no_mpi + example_deps
# wave_examples = ['inversion/synthetic_HTI.py',
# 'inversion/synthetic_VTI.py',
# 'inversion/synthetic_TTI.py',
# 'inversion/synthetic_sonic.py',
# 'inversion/synthetic_sonicHTI.py']
wave_examples = []
for i in wave_examples:
sortOutExample(i)
ex2=[os.path.join("examples", str(x)) for x in example_files]#+wave_examples]
#=============================================================================
local_env = env.Clone()
src_dir = local_env.Dir('.').srcnode().abspath
release_dir=os.path.join(env['prefix'],'release','doc')
Export('release_dir')
dir_cmd = "cd "+src_dir+" && "
# Need to use explicit tar/zip rather than the builder due to problems getting
# it not to put unwanted path components in the archive file
# --transform on tar is not supported on savanna
zip_path=os.path.join(release_dir, 'escript_examples.zip')
zip = local_env.Command(zip_path, None, dir_cmd+"zip "+zip_path+" "+" ".join(ex2))
env.Alias('examples_zipfile', zip)
tar_path=os.path.join(release_dir, 'escript_examples.tar')
targz_path=os.path.join(release_dir, 'escript_examples.tar.gz')
tar = local_env.Command(tar_path, None, dir_cmd+"tar -cf "+tar_path+" "+" ".join(ex2))
targz = local_env.Command(targz_path, tar, "gzip -n -9 "+tar_path)
env.Alias('examples_tarfile', targz)
#env=Environment(TARFLAGS = "-c -z",chdir=src_dir)
#if 'Tar' in dir(env):
# tar=env.Tar(tar_path, example_files, chdir=src_dir)
# env.Alias('examples_tarfile', tar)
local_env.SConscript(dirs = ['#/doc/cookbook'], variant_dir='cookbook', duplicate=1)
local_env.SConscript(dirs = ['#/doc/user'], variant_dir='user', duplicate=1)
local_env.SConscript(dirs = ['#/doc/inversion'], variant_dir='inversion', duplicate=1)
local_env.SConscript(dirs = ['#/doc/epydoc'], variant_dir='epydoc', duplicate=1)
local_env.SConscript(dirs = ['#/doc/sphinx_api'], variant_dir='sphinx_api', duplicate=1)
local_env.SConscript(dirs = ['#/doc/doxygen'], variant_dir='doxygen', duplicate=1)
local_env.SConscript(dirs = ['#/doc/install'], variant_dir='install', duplicate=1)
local_env.SConscript(dirs = ['#/doc/examples'], variant_dir='examples', duplicate=1, exports=['example_files_allow_mpi', 'example_files_no_mpi', 'example_deps'])
|
