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#!/usr/bin/python
"""
06 Feb 2011
use slr to compute evolutionary rates
"""
__author__ = "Francois-Jose Serra"
__email__ = "francois@barrabin.org"
__licence__ = "GPLv3"
__version__ = "0.0"
from ete3 import EvolTree
tree = EvolTree ("data/S_example/measuring_S_tree.nw")
tree.link_to_alignment ("data/S_example/alignment_S_measuring_evol.fasta")
tree.run_model ('SLR')
slr = tree.get_evol_model ('SLR')
slr.set_histface (up=False, kind='curve',errors=True,
hlines = [1.0,0.3], hlines_col=['black','grey'])
tree.show (histfaces=['SLR'])
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