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Supplemental results for CODEML (seqf: algn treef: tree)
dN/dS (w) for site classes (K=2)
p: 0.93813 0.06187
w: 0.06076 1.00000
Naive Empirical Bayes (NEB) probabilities for 2 classes & postmean_w
(amino acids refer to 1st sequence: Gorilla_gorilla)
1 M 0.96921 0.03079 ( 1) 0.090
2 A 0.94915 0.05085 ( 1) 0.109
3 R 0.97797 0.02203 ( 1) 0.081
4 Y 0.97934 0.02066 ( 1) 0.080
5 R 0.97239 0.02761 ( 1) 0.087
6 C 0.98905 0.01095 ( 1) 0.071
7 C 0.98333 0.01667 ( 1) 0.076
8 R 0.98115 0.01885 ( 1) 0.078
9 S 0.98512 0.01488 ( 1) 0.075
10 Q 0.98131 0.01869 ( 1) 0.078
11 S 0.98512 0.01488 ( 1) 0.075
12 R 0.96886 0.03114 ( 1) 0.090
13 S 0.98512 0.01488 ( 1) 0.075
14 R 0.97239 0.02761 ( 1) 0.087
15 C 0.97638 0.02362 ( 1) 0.083
16 Y 0.97524 0.02476 ( 1) 0.084
17 R 0.97723 0.02277 ( 1) 0.082
18 Q 0.98131 0.01869 ( 1) 0.078
19 S 0.76817 0.23183 ( 1) 0.279
20 R 0.96995 0.03005 ( 1) 0.089
21 S 0.98512 0.01488 ( 1) 0.075
22 R 0.97474 0.02526 ( 1) 0.084
23 C 0.97078 0.02922 ( 1) 0.088
24 Y 0.74652 0.25348 ( 1) 0.299
25 R 0.97723 0.02277 ( 1) 0.082
26 Q 0.98071 0.01929 ( 1) 0.079
27 R 0.97549 0.02451 ( 1) 0.084
28 Q 0.97521 0.02479 ( 1) 0.084
29 S 0.98512 0.01488 ( 1) 0.075
30 Q 0.97802 0.02198 ( 1) 0.081
31 S 0.97876 0.02124 ( 1) 0.081
32 R 0.96995 0.03005 ( 1) 0.089
33 S 0.78537 0.21463 ( 1) 0.262
34 R 0.72010 0.27990 ( 1) 0.324
35 C 0.97867 0.02133 ( 1) 0.081
36 Y 0.97524 0.02476 ( 1) 0.084
37 R 0.97723 0.02277 ( 1) 0.082
38 Q 0.98131 0.01869 ( 1) 0.078
39 S 0.98512 0.01488 ( 1) 0.075
40 Q 0.97812 0.02188 ( 1) 0.081
41 S 0.76817 0.23183 ( 1) 0.279
42 R 0.96995 0.03005 ( 1) 0.089
43 S 0.98512 0.01488 ( 1) 0.075
44 R 0.97474 0.02526 ( 1) 0.084
45 C 0.97078 0.02922 ( 1) 0.088
46 Y 0.97934 0.02066 ( 1) 0.080
47 R 0.97723 0.02277 ( 1) 0.082
48 Q 0.98071 0.01929 ( 1) 0.079
49 R 0.97239 0.02761 ( 1) 0.087
50 Q 0.97521 0.02479 ( 1) 0.084
51 R 0.97239 0.02761 ( 1) 0.087
52 S 0.97540 0.02460 ( 1) 0.084
53 R 0.97551 0.02449 ( 1) 0.084
54 R 0.97239 0.02761 ( 1) 0.087
55 R 0.95266 0.04734 ( 1) 0.105
56 R 0.97797 0.02203 ( 1) 0.081
57 R 0.97187 0.02813 ( 1) 0.087
58 R 0.96616 0.03384 ( 1) 0.093
59 S 0.77337 0.22663 ( 1) 0.274
60 C 0.98905 0.01095 ( 1) 0.071
61 Q 0.98131 0.01869 ( 1) 0.078
62 T 0.95838 0.04162 ( 1) 0.100
63 R 0.96995 0.03005 ( 1) 0.089
64 R 0.97797 0.02203 ( 1) 0.081
65 R 0.97239 0.02761 ( 1) 0.087
66 A 0.94915 0.05085 ( 1) 0.109
67 M 0.96921 0.03079 ( 1) 0.090
68 R 0.97797 0.02203 ( 1) 0.081
69 C 0.98569 0.01431 ( 1) 0.074
70 R 0.98115 0.01885 ( 1) 0.078
71 R 0.98115 0.01885 ( 1) 0.078
72 R 0.97797 0.02203 ( 1) 0.081
73 Y 0.97934 0.02066 ( 1) 0.080
74 R 0.97524 0.02476 ( 1) 0.084
75 L 0.96072 0.03928 ( 1) 0.098
76 R 0.97328 0.02672 ( 1) 0.086
77 R 0.96189 0.03811 ( 1) 0.097
78 R 0.63028 0.36972 ( 1) 0.408
79 R 0.48815 0.51185 ( 2) 0.542
80 P 0.00047 0.99953 ( 2) 1.000
81 Y 0.97211 0.02789 ( 1) 0.087
82 H 0.98099 0.01901 ( 1) 0.079
83 I 0.95719 0.04281 ( 1) 0.101
84 V 0.94612 0.05388 ( 1) 0.111
85 S 0.94623 0.05377 ( 1) 0.111
lnL = -511.919210
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