File: example2.xml

package info (click to toggle)
python-ete3 3.1.2%2Bdfsg-2
  • links: PTS, VCS
  • area: main
  • in suites: bullseye
  • size: 14,152 kB
  • sloc: python: 52,375; javascript: 12,959; xml: 4,903; ansic: 69; sql: 65; makefile: 26; sh: 7
file content (47 lines) | stat: -rw-r--r-- 1,969 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
<phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://www.phyloxml.org" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd">
    <phylogeny rooted="true">
        <name>Alcohol dehydrogenases</name>
        <description>contains examples of commonly used elements</description>
        <clade>
            <events>
                <speciations>1</speciations>
            </events>
            <clade>
                <taxonomy>
                    <id provider="ncbi">6645</id>
                    <scientific_name>Octopus vulgaris</scientific_name>
                </taxonomy>
                <sequence>
                    <accession source="UniProtKB">P81431</accession>
                    <name>Alcohol dehydrogenase class-3</name>
                </sequence>
            </clade>
            <clade>
                <confidence type="bootstrap">100</confidence>
                <events>
                    <speciations>1</speciations>
                </events>
                <clade>
                    <taxonomy>
                        <id provider="ncbi">1423</id>
                        <scientific_name>Bacillus subtilis</scientific_name>
                    </taxonomy>
                    <sequence>
                        <accession source="UniProtKB">P71017</accession>
                        <name>Alcohol dehydrogenase</name>
                    </sequence>
                </clade>
                <clade>
                    <taxonomy>
                        <id provider="ncbi">562</id>
                        <scientific_name>Escherichia coli</scientific_name>
                    </taxonomy>
                    <sequence>
                        <accession source="UniProtKB">Q46856</accession>
                        <name>Alcohol dehydrogenase</name>
                    </sequence>
                </clade>
            </clade>
        </clade>
    </phylogeny>
</phyloxml>