from __future__ import absolute_import
import six
# #START_LICENSE###########################################################
#
#
# This file is part of the Environment for Tree Exploration program
# (ETE).  http://etetoolkit.org
#
# ETE is free software: you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# ETE is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
# or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public
# License for more details.
#
# You should have received a copy of the GNU General Public License
# along with ETE.  If not, see <http://www.gnu.org/licenses/>.
#
#
#                     ABOUT THE ETE PACKAGE
#                     =====================
#
# ETE is distributed under the GPL copyleft license (2008-2015).
#
# If you make use of ETE in published work, please cite:
#
# Jaime Huerta-Cepas, Joaquin Dopazo and Toni Gabaldon.
# ETE: a python Environment for Tree Exploration. Jaime BMC
# Bioinformatics 2010,:24doi:10.1186/1471-2105-11-24
#
# Note that extra references to the specific methods implemented in
# the toolkit may be available in the documentation.
#
# More info at http://etetoolkit.org. Contact: huerta@embl.de
#
#
# #END_LICENSE#############################################################
# Backport of OrderedDict() class that runs on Python 2.4, 2.5, 2.6, 2.7 and pypy.
# Passes Python2.7's test suite and incorporates all the latest updates.

try:
    from six.moves._thread import get_ident as _get_ident
except ImportError:
    from six.moves._dummy_thread import get_ident as _get_ident

try:
    from _abcoll import KeysView, ValuesView, ItemsView
except ImportError:
    pass


class OrderedDict(dict):
    'Dictionary that remembers insertion order'
    # An inherited dict maps keys to values.
    # The inherited dict provides __getitem__, __len__, __contains__, and get.
    # The remaining methods are order-aware.
    # Big-O running times for all methods are the same as for regular dictionaries.

    # The internal self.__map dictionary maps keys to links in a doubly linked list.
    # The circular doubly linked list starts and ends with a sentinel element.
    # The sentinel element never gets deleted (this simplifies the algorithm).
    # Each link is stored as a list of length three:  [PREV, NEXT, KEY].

    def __init__(self, *args, **kwds):
        '''Initialize an ordered dictionary.  Signature is the same as for
        regular dictionaries, but keyword arguments are not recommended
        because their insertion order is arbitrary.

        '''
        if len(args) > 1:
            raise TypeError('expected at most 1 arguments, got %d' % len(args))
        try:
            self.__root
        except AttributeError:
            self.__root = root = []                     # sentinel node
            root[:] = [root, root, None]
            self.__map = {}
        self.__update(*args, **kwds)

    def __setitem__(self, key, value, dict_setitem=dict.__setitem__):
        'od.__setitem__(i, y) <==> od[i]=y'
        # Setting a new item creates a new link which goes at the end of the linked
        # list, and the inherited dictionary is updated with the new key/value pair.
        if key not in self:
            root = self.__root
            last = root[0]
            last[1] = root[0] = self.__map[key] = [last, root, key]
        dict_setitem(self, key, value)

    def __delitem__(self, key, dict_delitem=dict.__delitem__):
        'od.__delitem__(y) <==> del od[y]'
        # Deleting an existing item uses self.__map to find the link which is
        # then removed by updating the links in the predecessor and successor nodes.
        dict_delitem(self, key)
        link_prev, link_next, key = self.__map.pop(key)
        link_prev[1] = link_next
        link_next[0] = link_prev

    def __iter__(self):
        'od.__iter__() <==> iter(od)'
        root = self.__root
        curr = root[1]
        while curr is not root:
            yield curr[2]
            curr = curr[1]

    def __reversed__(self):
        'od.__reversed__() <==> reversed(od)'
        root = self.__root
        curr = root[0]
        while curr is not root:
            yield curr[2]
            curr = curr[0]

    def clear(self):
        'od.clear() -> None.  Remove all items from od.'
        try:
            for node in six.itervalues(self.__map):
                del node[:]
            root = self.__root
            root[:] = [root, root, None]
            self.__map.clear()
        except AttributeError:
            pass
        dict.clear(self)

    def popitem(self, last=True):
        '''od.popitem() -> (k, v), return and remove a (key, value) pair.
        Pairs are returned in LIFO order if last is true or FIFO order if false.

        '''
        if not self:
            raise KeyError('dictionary is empty')
        root = self.__root
        if last:
            link = root[0]
            link_prev = link[0]
            link_prev[1] = root
            root[0] = link_prev
        else:
            link = root[1]
            link_next = link[1]
            root[1] = link_next
            link_next[0] = root
        key = link[2]
        del self.__map[key]
        value = dict.pop(self, key)
        return key, value

    # -- the following methods do not depend on the internal structure --

    def keys(self):
        'od.keys() -> list of keys in od'
        return list(self)

    def values(self):
        'od.values() -> list of values in od'
        return [self[key] for key in self]

    def items(self):
        'od.items() -> list of (key, value) pairs in od'
        return [(key, self[key]) for key in self]

    def iterkeys(self):
        'od.iterkeys() -> an iterator over the keys in od'
        return iter(self)

    def itervalues(self):
        'od.itervalues -> an iterator over the values in od'
        for k in self:
            yield self[k]

    def iteritems(self):
        'od.iteritems -> an iterator over the (key, value) items in od'
        for k in self:
            yield (k, self[k])

    def update(*args, **kwds):
        '''od.update(E, **F) -> None.  Update od from dict/iterable E and F.

        If E is a dict instance, does:           for k in E: od[k] = E[k]
        If E has a .keys() method, does:         for k in E.keys(): od[k] = E[k]
        Or if E is an iterable of items, does:   for k, v in E: od[k] = v
        In either case, this is followed by:     for k, v in F.items(): od[k] = v

        '''
        if len(args) > 2:
            raise TypeError('update() takes at most 2 positional '
                            'arguments (%d given)' % (len(args),))
        elif not args:
            raise TypeError('update() takes at least 1 argument (0 given)')
        self = args[0]
        # Make progressively weaker assumptions about "other"
        other = ()
        if len(args) == 2:
            other = args[1]
        if isinstance(other, dict):
            for key in other:
                self[key] = other[key]
        elif hasattr(other, 'keys'):
            for key in list(other.keys()):
                self[key] = other[key]
        else:
            for key, value in other:
                self[key] = value
        for key, value in list(kwds.items()):
            self[key] = value

    __update = update  # let subclasses override update without breaking __init__

    __marker = object()

    def pop(self, key, default=__marker):
        '''od.pop(k[,d]) -> v, remove specified key and return the corresponding value.
        If key is not found, d is returned if given, otherwise KeyError is raised.

        '''
        if key in self:
            result = self[key]
            del self[key]
            return result
        if default is self.__marker:
            raise KeyError(key)
        return default

    def setdefault(self, key, default=None):
        'od.setdefault(k[,d]) -> od.get(k,d), also set od[k]=d if k not in od'
        if key in self:
            return self[key]
        self[key] = default
        return default

    def __repr__(self, _repr_running=None):
        'od.__repr__() <==> repr(od)'
        if _repr_running is None:
            _repr_running = {}
        call_key = id(self), _get_ident()
        if call_key in _repr_running:
            return '...'
        _repr_running[call_key] = 1
        try:
            if not self:
                return '%s()' % (self.__class__.__name__,)
            return '%s(%r)' % (self.__class__.__name__, list(self.items()))
        finally:
            del _repr_running[call_key]

    def __reduce__(self):
        'Return state information for pickling'
        items = [[k, self[k]] for k in self]
        inst_dict = vars(self).copy()
        for k in vars(OrderedDict()):
            inst_dict.pop(k, None)
        if inst_dict:
            return (self.__class__, (items,), inst_dict)
        return self.__class__, (items,)

    def copy(self):
        'od.copy() -> a shallow copy of od'
        return self.__class__(self)

    @classmethod
    def fromkeys(cls, iterable, value=None):
        '''OD.fromkeys(S[, v]) -> New ordered dictionary with keys from S
        and values equal to v (which defaults to None).

        '''
        d = cls()
        for key in iterable:
            d[key] = value
        return d

    def __eq__(self, other):
        '''od.__eq__(y) <==> od==y.  Comparison to another OD is order-sensitive
        while comparison to a regular mapping is order-insensitive.

        '''
        if isinstance(other, OrderedDict):
            return len(self)==len(other) and list(self.items()) == list(other.items())
        return dict.__eq__(self, other)

    def __ne__(self, other):
        return not self == other

    # -- the following methods are only used in Python 2.7 --

    def viewkeys(self):
        "od.viewkeys() -> a set-like object providing a view on od's keys"
        return KeysView(self)

    def viewvalues(self):
        "od.viewvalues() -> an object providing a view on od's values"
        return ValuesView(self)

    def viewitems(self):
        "od.viewitems() -> a set-like object providing a view on od's items"
        return ItemsView(self)