1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
|
from __future__ import absolute_import
# #START_LICENSE###########################################################
#
#
# This file is part of the Environment for Tree Exploration program
# (ETE). http://etetoolkit.org
#
# ETE is free software: you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# ETE is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
# or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public
# License for more details.
#
# You should have received a copy of the GNU General Public License
# along with ETE. If not, see <http://www.gnu.org/licenses/>.
#
#
# ABOUT THE ETE PACKAGE
# =====================
#
# ETE is distributed under the GPL copyleft license (2008-2015).
#
# If you make use of ETE in published work, please cite:
#
# Jaime Huerta-Cepas, Joaquin Dopazo and Toni Gabaldon.
# ETE: a python Environment for Tree Exploration. Jaime BMC
# Bioinformatics 2010,:24doi:10.1186/1471-2105-11-24
#
# Note that extra references to the specific methods implemented in
# the toolkit may be available in the documentation.
#
# More info at http://etetoolkit.org. Contact: huerta@embl.de
#
#
# #END_LICENSE#############################################################
# -*- coding: utf-8 -*-
# Form implementation generated from reading ui file 'ete_qt4app.ui'
#
# Created: Tue Jan 10 15:56:57 2012
# by: PyQt4 UI code generator 4.7.2
#
# WARNING! All changes made in this file will be lost!
from __future__ import absolute_import
#from .qt import QtCore, QtGui
from .qt import *
class Ui_MainWindow(object):
def setupUi(self, MainWindow):
MainWindow.setObjectName("MainWindow")
MainWindow.resize(673, 493)
self.centralwidget = QWidget(MainWindow)
self.centralwidget.setObjectName("centralwidget")
MainWindow.setCentralWidget(self.centralwidget)
self.menubar = QMenuBar(MainWindow)
self.menubar.setGeometry(QRect(0, 0, 673, 27))
self.menubar.setObjectName("menubar")
self.menuFile = QMenu(self.menubar)
self.menuFile.setObjectName("menuFile")
self.menuAbout = QMenu(self.menubar)
self.menuAbout.setObjectName("menuAbout")
MainWindow.setMenuBar(self.menubar)
self.statusbar = QStatusBar(MainWindow)
self.statusbar.setObjectName("statusbar")
MainWindow.setStatusBar(self.statusbar)
self.toolBar = QToolBar(MainWindow)
self.toolBar.setEnabled(True)
self.toolBar.setObjectName("toolBar")
MainWindow.addToolBar(Qt.ToolBarArea(Qt.TopToolBarArea), self.toolBar)
self.actionOpen = QAction(MainWindow)
icon = QIcon()
icon.addPixmap(QPixmap(":/ete icons/fileopen.png"), QIcon.Normal, QIcon.Off)
self.actionOpen.setIcon(icon)
font = QFont()
self.actionOpen.setFont(font)
self.actionOpen.setObjectName("actionOpen")
self.actionPaste_newick = QAction(MainWindow)
self.actionPaste_newick.setObjectName("actionPaste_newick")
self.actionSave_image = QAction(MainWindow)
icon1 = QIcon()
icon1.addPixmap(QPixmap(":/ete icons/filesave.png"), QIcon.Normal, QIcon.Off)
self.actionSave_image.setIcon(icon1)
self.actionSave_image.setObjectName("actionSave_image")
self.actionSave_region = QAction(MainWindow)
self.actionSave_region.setObjectName("actionSave_region")
self.actionBranchLength = QAction(MainWindow)
self.actionBranchLength.setCheckable(True)
icon2 = QIcon()
icon2.addPixmap(QPixmap(":/ete icons/show_dist.png"), QIcon.Normal, QIcon.Off)
self.actionBranchLength.setIcon(icon2)
self.actionBranchLength.setObjectName("actionBranchLength")
self.actionZoomIn = QAction(MainWindow)
icon3 = QIcon()
icon3.addPixmap(QPixmap(":/ete icons/zoom_in.png"), QIcon.Normal, QIcon.Off)
self.actionZoomIn.setIcon(icon3)
self.actionZoomIn.setObjectName("actionZoomIn")
self.actionZoomOut = QAction(MainWindow)
icon4 = QIcon()
icon4.addPixmap(QPixmap(":/ete icons/zoom_out.png"), QIcon.Normal, QIcon.Off)
self.actionZoomOut.setIcon(icon4)
self.actionZoomOut.setObjectName("actionZoomOut")
self.actionETE = QAction(MainWindow)
self.actionETE.setObjectName("actionETE")
self.actionForceTopology = QAction(MainWindow)
self.actionForceTopology.setCheckable(True)
icon5 = QIcon()
icon5.addPixmap(QPixmap(":/ete icons/force_topo.png"), QIcon.Normal, QIcon.Off)
self.actionForceTopology.setIcon(icon5)
self.actionForceTopology.setProperty("HOLA", False)
self.actionForceTopology.setObjectName("actionForceTopology")
self.actionSave_newick = QAction(MainWindow)
self.actionSave_newick.setIcon(icon1)
self.actionSave_newick.setObjectName("actionSave_newick")
self.actionZoomInX = QAction(MainWindow)
icon6 = QIcon()
icon6.addPixmap(QPixmap(":/ete icons/x_expand.png"), QIcon.Normal, QIcon.Off)
self.actionZoomInX.setIcon(icon6)
self.actionZoomInX.setObjectName("actionZoomInX")
self.actionZoomOutX = QAction(MainWindow)
icon7 = QIcon()
icon7.addPixmap(QPixmap(":/ete icons/x_reduce.png"), QIcon.Normal, QIcon.Off)
self.actionZoomOutX.setIcon(icon7)
self.actionZoomOutX.setObjectName("actionZoomOutX")
self.actionZoomInY = QAction(MainWindow)
icon8 = QIcon()
icon8.addPixmap(QPixmap(":/ete icons/y_expand.png"), QIcon.Normal, QIcon.Off)
self.actionZoomInY.setIcon(icon8)
self.actionZoomInY.setObjectName("actionZoomInY")
self.actionZoomOutY = QAction(MainWindow)
icon9 = QIcon()
icon9.addPixmap(QPixmap(":/ete icons/y_reduce.png"), QIcon.Normal, QIcon.Off)
self.actionZoomOutY.setIcon(icon9)
self.actionZoomOutY.setProperty("actionBranchSupport", False)
self.actionZoomOutY.setObjectName("actionZoomOutY")
self.actionFit2tree = QAction(MainWindow)
icon10 = QIcon()
icon10.addPixmap(QPixmap(":/ete icons/fit_tree.png"), QIcon.Normal, QIcon.Off)
self.actionFit2tree.setIcon(icon10)
self.actionFit2tree.setObjectName("actionFit2tree")
self.actionFit2region = QAction(MainWindow)
icon11 = QIcon()
icon11.addPixmap(QPixmap(":/ete icons/fit_region.png"), QIcon.Normal, QIcon.Off)
self.actionFit2region.setIcon(icon11)
self.actionFit2region.setObjectName("actionFit2region")
self.actionRenderPDF = QAction(MainWindow)
icon12 = QIcon()
icon12.addPixmap(QPixmap(":/ete icons/export_pdf.png"), QIcon.Normal, QIcon.Off)
self.actionRenderPDF.setIcon(icon12)
self.actionRenderPDF.setObjectName("actionRenderPDF")
self.actionSearchNode = QAction(MainWindow)
icon13 = QIcon()
icon13.addPixmap(QPixmap(":/ete icons/search.png"), QIcon.Normal, QIcon.Off)
self.actionSearchNode.setIcon(icon13)
self.actionSearchNode.setObjectName("actionSearchNode")
self.actionClear_search = QAction(MainWindow)
icon14 = QIcon()
icon14.addPixmap(QPixmap(":/ete icons/clean_search.png"), QIcon.Normal, QIcon.Off)
self.actionClear_search.setIcon(icon14)
self.actionClear_search.setObjectName("actionClear_search")
self.actionShow_newick = QAction(MainWindow)
icon15 = QIcon()
icon15.addPixmap(QPixmap(":/ete icons/show_newick.png"), QIcon.Normal, QIcon.Off)
self.actionShow_newick.setIcon(icon15)
self.actionShow_newick.setObjectName("actionShow_newick")
self.actionShow_node_attributes_box = QAction(MainWindow)
self.actionShow_node_attributes_box.setCheckable(True)
self.actionShow_node_attributes_box.setChecked(True)
self.actionShow_node_attributes_box.setObjectName("actionShow_node_attributes_box")
self.actionRender_selected_region = QAction(MainWindow)
self.actionRender_selected_region.setIcon(icon12)
self.actionRender_selected_region.setShortcutContext(Qt.WidgetShortcut)
self.actionRender_selected_region.setObjectName("actionRender_selected_region")
self.actionBranchSupport = QAction(MainWindow)
self.actionBranchSupport.setCheckable(True)
icon16 = QIcon()
icon16.addPixmap(QPixmap(":/ete icons/show_support.png"), QIcon.Normal, QIcon.Off)
self.actionBranchSupport.setIcon(icon16)
self.actionBranchSupport.setObjectName("actionBranchSupport")
self.actionLeafName = QAction(MainWindow)
self.actionLeafName.setCheckable(True)
icon17 = QIcon()
icon17.addPixmap(QPixmap(":/ete icons/show_names.png"), QIcon.Normal, QIcon.Off)
self.actionLeafName.setIcon(icon17)
self.actionLeafName.setObjectName("actionLeafName")
self.menuFile.addAction(self.actionOpen)
self.menuFile.addAction(self.actionPaste_newick)
self.menuFile.addAction(self.actionSave_newick)
self.menuFile.addAction(self.actionRenderPDF)
self.menuFile.addAction(self.actionRender_selected_region)
self.menuAbout.addAction(self.actionETE)
self.menubar.addAction(self.menuFile.menuAction())
self.menubar.addAction(self.menuAbout.menuAction())
self.toolBar.addAction(self.actionZoomIn)
self.toolBar.addAction(self.actionZoomOut)
self.toolBar.addAction(self.actionFit2tree)
self.toolBar.addAction(self.actionFit2region)
self.toolBar.addAction(self.actionZoomInX)
self.toolBar.addAction(self.actionZoomOutX)
self.toolBar.addAction(self.actionZoomInY)
self.toolBar.addAction(self.actionZoomOutY)
self.toolBar.addAction(self.actionSearchNode)
self.toolBar.addAction(self.actionClear_search)
self.toolBar.addAction(self.actionForceTopology)
self.toolBar.addAction(self.actionBranchLength)
self.toolBar.addAction(self.actionBranchSupport)
self.toolBar.addAction(self.actionLeafName)
self.toolBar.addAction(self.actionRenderPDF)
self.toolBar.addAction(self.actionShow_newick)
self.retranslateUi(MainWindow)
QMetaObject.connectSlotsByName(MainWindow)
def retranslateUi(self, MainWindow):
MainWindow.setWindowTitle(QApplication.translate("MainWindow", "MainWindow", None))
self.menuFile.setTitle(QApplication.translate("MainWindow", "File", None))
self.menuAbout.setTitle(QApplication.translate("MainWindow", "About", None))
self.toolBar.setWindowTitle(QApplication.translate("MainWindow", "toolBar", None))
self.actionOpen.setText(QApplication.translate("MainWindow", "Open newick tree", None))
self.actionOpen.setShortcut(QApplication.translate("MainWindow", "Ctrl+O", None))
self.actionPaste_newick.setText(QApplication.translate("MainWindow", "Paste newick", None))
self.actionPaste_newick.setShortcut(QApplication.translate("MainWindow", "Ctrl+P", None))
self.actionSave_image.setText(QApplication.translate("MainWindow", "Save Image", None))
self.actionSave_region.setText(QApplication.translate("MainWindow", "Save region", None))
self.actionSave_region.setShortcut(QApplication.translate("MainWindow", "Ctrl+A", None))
self.actionBranchLength.setText(QApplication.translate("MainWindow", "Show branch info", None))
self.actionBranchLength.setShortcut(QApplication.translate("MainWindow", "L", None))
self.actionZoomIn.setText(QApplication.translate("MainWindow", "Zoom in", None))
self.actionZoomIn.setShortcut(QApplication.translate("MainWindow", "Z", None))
self.actionZoomOut.setText(QApplication.translate("MainWindow", "Zoom out", None))
self.actionZoomOut.setShortcut(QApplication.translate("MainWindow", "X", None))
self.actionETE.setText(QApplication.translate("MainWindow", "ETE", None))
self.actionForceTopology.setText(QApplication.translate("MainWindow", "Force topology", None))
self.actionForceTopology.setToolTip(QApplication.translate("MainWindow", "Allows to see topology by setting assuming all branch lenghts are 1.0", None))
self.actionForceTopology.setShortcut(QApplication.translate("MainWindow", "T", None))
self.actionSave_newick.setText(QApplication.translate("MainWindow", "Save as newick", None))
self.actionZoomInX.setText(QApplication.translate("MainWindow", "Increase X scale", None))
self.actionZoomOutX.setText(QApplication.translate("MainWindow", "Decrease X scale", None))
self.actionZoomInY.setText(QApplication.translate("MainWindow", "Increase Y scale", None))
self.actionZoomOutY.setText(QApplication.translate("MainWindow", "Decrease Y scale", None))
self.actionFit2tree.setText(QApplication.translate("MainWindow", "Fit to tree", None))
self.actionFit2tree.setShortcut(QApplication.translate("MainWindow", "W", None))
self.actionFit2region.setText(QApplication.translate("MainWindow", "Fit to selection", None))
self.actionFit2region.setShortcut(QApplication.translate("MainWindow", "R", None))
self.actionRenderPDF.setText(QApplication.translate("MainWindow", "Render PDF image", None))
self.actionSearchNode.setText(QApplication.translate("MainWindow", "Search", None))
self.actionSearchNode.setShortcut(QApplication.translate("MainWindow", "Ctrl+S", None))
self.actionClear_search.setText(QApplication.translate("MainWindow", "Clear search", None))
self.actionClear_search.setShortcut(QApplication.translate("MainWindow", "Ctrl+C", None))
self.actionShow_newick.setText(QApplication.translate("MainWindow", "Show newick", None))
self.actionShow_newick.setShortcut(QApplication.translate("MainWindow", "N", None))
self.actionShow_node_attributes_box.setText(QApplication.translate("MainWindow", "Show node attributes box", None))
self.actionRender_selected_region.setText(QApplication.translate("MainWindow", "Render selected region", None))
self.actionBranchSupport.setText(QApplication.translate("MainWindow", "Show branch support", None))
self.actionBranchSupport.setToolTip(QApplication.translate("MainWindow", "Show branch support", None))
self.actionBranchSupport.setShortcut(QApplication.translate("MainWindow", "S", None))
self.actionLeafName.setText(QApplication.translate("MainWindow", "Show leaf names", None))
self.actionLeafName.setToolTip(QApplication.translate("MainWindow", "show leaf names", None))
self.actionLeafName.setShortcut(QApplication.translate("MainWindow", "N", None))
from . import ete_resources_rc
|
