File: tree_traverse.py

package info (click to toggle)
python-ete3 3.1.2%2Bdfsg-3
  • links: PTS, VCS
  • area: main
  • in suites: bookworm
  • size: 14,148 kB
  • sloc: python: 52,375; javascript: 12,959; xml: 4,903; ansic: 69; sql: 65; makefile: 26; sh: 7
file content (48 lines) | stat: -rw-r--r-- 1,046 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
from ete3 import Tree
t = Tree( '(A:1,(B:1,(C:1,D:1):0.5):0.5);' )
# Visit nodes in preorder (this is the default strategy)
for n in t.traverse():
    print(n)
# It Will visit the nodes in the following order:
#           /-A
# ---------|
#          |          /-B
#           \--------|
#                    |          /-C
#                     \--------|
#                               \-D
# --A
#           /-B
# ---------|
#          |          /-C
#           \--------|
#                     \-D
# --B
#           /-C
# ---------|
#           \-D
# --C
# --D
# Visit nodes in postorder
for n in t.traverse("postorder"):
    print(n)
# It Will visit the nodes in the following order:
# --A
# --B
# --C
# --D
#           /-C
# ---------|
#           \-D
#           /-B
# ---------|
#          |          /-C
#           \--------|
#                     \-D
#           /-A
# ---------|
#          |          /-B
#           \--------|
#                    |          /-C
#                     \--------|
#                               \-D