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# -*- coding: utf-8 -*-
import datetime
from pathlib import Path
import numpy as np
import os
import pandas as pd
import pandas.testing as tm
from fastparquet import ParquetFile
from fastparquet import write, parquet_thrift, update_file_custom_metadata
from fastparquet import writer, encoding
from .util import makeMixedDataFrame
from pandas.testing import assert_frame_equal
from pandas.api.types import CategoricalDtype
import pytest
from fastparquet.util import default_mkdirs
from .util import s3, tempdir, sql, TEST_DATA
from fastparquet import cencoding
def test_uvarint():
values = np.random.randint(0, 15000, size=100)
buf = np.zeros(30, dtype=np.uint8)
o = cencoding.NumpyIO(buf)
for v in values:
o.seek(0)
cencoding.encode_unsigned_varint(v, o)
o.seek(0)
out = cencoding.read_unsigned_var_int(o)
assert v == out
def test_bitpack():
for _ in range(10):
values = np.random.randint(0, 15000, size=np.random.randint(10, 100),
dtype=np.int32)
width = cencoding.width_from_max_int(values.max())
buf = np.zeros(900, dtype=np.uint8)
o = cencoding.NumpyIO(buf)
cencoding.encode_bitpacked(values, width, o)
o.seek(0)
head = cencoding.read_unsigned_var_int(o)
buf2 = np.zeros(300, dtype=np.int32)
out = cencoding.NumpyIO(buf2.view("uint8"))
cencoding.read_bitpacked(o, head, width, out)
assert (values == buf2[:len(values)]).all()
assert buf2[len(values):].sum() == 0 # zero padding
assert out.tell() // 8 - len(values) < 8
def test_length():
lengths = np.random.randint(0, 15000, size=100)
buf = np.zeros(900, dtype=np.uint8)
o = cencoding.NumpyIO(buf)
for l in lengths:
o.seek(0)
o.write_int(l)
o.seek(0)
out = buf.view('int32')[0]
assert l == out
def test_rle_bp():
for _ in range(10):
values = np.random.randint(0, 15000, size=np.random.randint(10, 100),
dtype=np.int32)
buf = np.empty(len(values) + 5, dtype=np.int32)
out = cencoding.NumpyIO(buf.view('uint8'))
buf2 = np.zeros(900, dtype=np.uint8)
o = cencoding.NumpyIO(buf2)
width = cencoding.width_from_max_int(values.max())
# without length
cencoding.encode_rle_bp(values, width, o)
l = o.tell()
o.seek(0)
cencoding.read_rle_bit_packed_hybrid(o, width, length=l, o=out)
assert (buf[:len(values)] == values).all()
def test_roundtrip_s3(s3):
data = pd.DataFrame({'i32': np.arange(1000, dtype=np.int32),
'i64': np.arange(1000, dtype=np.int64),
'f': np.arange(1000, dtype=np.float64),
'bhello': np.random.choice([b'hello', b'you',
b'people'], size=1000).astype("O")})
data['hello'] = data.bhello.str.decode('utf8')
data['bcat'] = data.bhello.astype('category')
data.loc[100, 'f'] = np.nan
data['cat'] = data.hello.astype('category')
noop = lambda x: True
myopen = s3.open
write(TEST_DATA+'/temp_parq', data, file_scheme='hive',
row_group_offsets=[0, 500], open_with=myopen, mkdirs=noop)
myopen = s3.open
pf = ParquetFile(TEST_DATA+'/temp_parq', open_with=myopen)
df = pf.to_pandas(categories=['cat', 'bcat'])
for col in data:
assert (df[col] == data[col])[~df[col].isnull()].all()
@pytest.mark.parametrize('scheme', ['simple', 'hive'])
@pytest.mark.parametrize('row_groups', [[0], [0, 500]])
@pytest.mark.parametrize('comp', ['SNAPPY', None, 'GZIP'])
def test_roundtrip(tempdir, scheme, row_groups, comp):
data = pd.DataFrame({'i32': np.arange(1000, dtype=np.int32),
'i64': np.arange(1000, dtype=np.int64),
'u64': np.arange(1000, dtype=np.uint64),
'f': np.arange(1000, dtype=np.float64),
'bhello': np.random.choice([b'hello', b'you',
b'people'], size=1000).astype("O")})
data['a'] = np.array([b'a', b'b', b'c', b'd', b'e']*200, dtype="S1")
data['aa'] = data['a'].map(lambda x: 2*x).astype("S2")
data['hello'] = data.bhello.str.decode('utf8')
data['bcat'] = data.bhello.astype('category')
data['cat'] = data.hello.astype('category')
fname = os.path.join(tempdir, 'test.parquet')
write(fname, data, file_scheme=scheme, row_group_offsets=row_groups,
compression=comp)
r = ParquetFile(fname)
assert r.fmd.num_rows == r.count() == 1000
df = r.to_pandas()
assert data.cat.dtype == 'category'
for col in r.columns:
assert (df[col] == data[col]).all()
# tests https://github.com/dask/fastparquet/issues/250
assert isinstance(data[col][0], type(df[col][0]))
def test_bad_coltype(tempdir):
df = pd.DataFrame({'0': [1, 2], (0, 1): [3, 4]})
fn = os.path.join(tempdir, 'temp.parq')
with pytest.raises((ValueError, TypeError)) as e:
write(fn, df)
assert "tuple" in str(e.value)
def test_bad_col(tempdir):
df = pd.DataFrame({'x': [1, 2]})
fn = os.path.join(tempdir, 'temp.parq')
with pytest.raises(ValueError) as e:
write(fn, df, has_nulls=['y'])
@pytest.mark.parametrize('scheme', ('simple', 'hive'))
def test_roundtrip_complex(tempdir, scheme,):
import datetime
data = pd.DataFrame({'ui32': np.arange(1000, dtype=np.uint32),
'i16': np.arange(1000, dtype=np.int16),
'ui8': np.array([1, 2, 3, 4]*250, dtype=np.uint8),
'f16': np.arange(1000, dtype=np.float16),
'dicts': [{'oi': 'you'}] * 1000,
't': [datetime.datetime.now()] * 1000,
'td': [datetime.timedelta(seconds=1)] * 1000,
'bool': np.random.choice([True, False], size=1000)
})
data.loc[100, 't'] = None
fname = os.path.join(tempdir, 'test.parquet')
write(fname, data, file_scheme=scheme)
r = ParquetFile(fname)
df = r.to_pandas()
for col in r.columns:
assert (df[col] == data[col])[~data[col].isnull()].all()
@pytest.mark.parametrize('df', [
makeMixedDataFrame(),
pd.DataFrame({'x': pd.date_range('3/6/2012 00:00',
periods=10, freq='H', tz='Europe/London')}),
pd.DataFrame({'x': pd.date_range('3/6/2012 00:00',
periods=10, freq='H', tz='Europe/Berlin')}),
pd.DataFrame({'x': pd.date_range('3/6/2012 00:00',
periods=10, freq='H', tz='UTC')}),
pd.DataFrame({'x': pd.date_range('3/6/2012 00:00',
periods=10, freq='H', tz=datetime.timezone.min)}),
pd.DataFrame({'x': pd.date_range('3/6/2012 00:00',
periods=10, freq='H', tz=datetime.timezone.max)})
])
def test_datetime_roundtrip(tempdir, df, capsys):
fname = os.path.join(tempdir, 'test.parquet')
w = False
write(fname, df)
r = ParquetFile(fname)
if w:
assert any("UTC" in str(wm.message) for wm in w.list)
df2 = r.to_pandas()
pd.testing.assert_frame_equal(df, df2, check_categorical=False)
def test_nulls_roundtrip(tempdir):
fname = os.path.join(tempdir, 'temp.parq')
data = pd.DataFrame({'o': np.random.choice(['hello', 'world', None],
size=1000)})
data['cat'] = data['o'].astype('category')
writer.write(fname, data, has_nulls=['o', 'cat'])
r = ParquetFile(fname)
df = r.to_pandas()
for col in r.columns:
assert (df[col] == data[col])[~data[col].isnull()].all()
assert (data[col].isnull() == df[col].isnull()).all()
def test_decimal_roundtrip(tempdir):
import decimal
def decimal_convert(x):
return decimal.Decimal(x)
fname = os.path.join(tempdir, 'decitemp.parq')
data = pd.DataFrame({'f64': np.arange(10000000, 10001000, dtype=np.float64) / 100000,
'f16': np.arange(1000, dtype=np.float16) /10000
})
data['f64']=data['f64'].apply(decimal_convert)
data['f16']=data['f16'].apply(decimal_convert)
writer.write(fname, data)
r = ParquetFile(fname)
df = r.to_pandas()
for col in r.columns:
assert (data[col] == df[col]).all()
def test_make_definitions_with_nulls():
for _ in range(10):
out = np.empty(1000, dtype=np.int32)
o = cencoding.NumpyIO(out.view("uint8"))
data = pd.Series(np.random.choice([True, None],
size=np.random.randint(1, 1000)))
defs, d2 = writer.make_definitions(data, False)
buf = np.frombuffer(defs, dtype=np.uint8)
i = cencoding.NumpyIO(buf)
cencoding.read_rle_bit_packed_hybrid(i, 1, length=0, o=o)
assert (out[:len(data)] == ~data.isnull()).sum()
def test_make_definitions_without_nulls():
for _ in range(100):
out = np.empty(10000, dtype=np.int32)
o = cencoding.NumpyIO(out.view("uint8"))
data = pd.Series([True] * np.random.randint(1, 10000))
defs, d2 = writer.make_definitions(data, True)
l = len(data) << 1
p = 1
while l > 127:
l >>= 7
p += 1
assert len(defs) == 4 + p + 1 # "length", num_count, value
i = cencoding.NumpyIO(np.frombuffer(defs, dtype=np.uint8))
cencoding.read_rle_bit_packed_hybrid(i, 1, length=0, o=o)
assert (out[:o.tell() // 4] == ~data.isnull()).sum()
# class mock:
# def is_required(self, *args):
# return False
# def max_definition_level(self, *args):
# return 1
# def __getattr__(self, item):
# return None
# halper, metadata = mock(), mock()
def test_empty_row_group(tempdir):
fname = os.path.join(tempdir, 'temp.parq')
data = pd.DataFrame({'o': np.random.choice(['hello', 'world'],
size=1000)})
writer.write(fname, data, row_group_offsets=[0, 900, 1800])
pf = ParquetFile(fname)
assert len(pf.row_groups) == 2
def test_int_rowgroups(tempdir):
df = pd.DataFrame({'a': [1]*100})
fname = os.path.join(tempdir, 'test.parq')
writer.write(fname, df, row_group_offsets=30)
r = ParquetFile(fname)
assert [rg.num_rows for rg in r.row_groups] == [25, 25, 25, 25]
writer.write(fname, df, row_group_offsets=33)
r = ParquetFile(fname)
assert [rg.num_rows for rg in r.row_groups] == [25, 25, 25, 25]
writer.write(fname, df, row_group_offsets=34)
r = ParquetFile(fname)
assert [rg.num_rows for rg in r.row_groups] == [34, 34, 32]
writer.write(fname, df, row_group_offsets=35)
r = ParquetFile(fname)
assert [rg.num_rows for rg in r.row_groups] == [34, 34, 32]
@pytest.mark.parametrize('scheme', ['hive', 'drill'])
def test_groups_roundtrip(tempdir, scheme):
df = pd.DataFrame({'a': np.random.choice(['a', 'b', None], size=1000),
'b': np.random.randint(0, 64000, size=1000),
'c': np.random.choice([True, False], size=1000)})
writer.write(tempdir, df, partition_on=['a', 'c'], file_scheme=scheme)
r = ParquetFile(tempdir)
assert r.columns == ['b']
out = r.to_pandas()
if scheme == 'drill':
assert set(r.cats) == {'dir0', 'dir1'}
assert set(out.columns) == {'b', 'dir0', 'dir1'}
out.rename(columns={'dir0': 'a', 'dir1': 'c'}, inplace=True)
for i, row in out.iterrows():
assert row.b in list(df[(df.a == row.a) & (df.c == row.c)].b)
writer.write(tempdir, df, row_group_offsets=[0, 50], partition_on=['a', 'c'],
file_scheme=scheme)
r = ParquetFile(tempdir)
assert r.fmd.num_rows == r.count() == sum(~df.a.isnull())
assert len(r.row_groups) == 8
out = r.to_pandas()
if scheme == 'drill':
assert set(out.columns) == {'b', 'dir0', 'dir1'}
out.rename(columns={'dir0': 'a', 'dir1': 'c'}, inplace=True)
for i, row in out.iterrows():
assert row.b in list(df[(df.a==row.a)&(df.c==row.c)].b)
def test_groups_iterable(tempdir):
df = pd.DataFrame({'a': np.random.choice(['aaa', 'bbb', None], size=1000),
'b': np.random.randint(0, 64000, size=1000),
'c': np.random.choice([True, False], size=1000)})
writer.write(tempdir, df, partition_on=['a'], file_scheme='hive')
r = ParquetFile(tempdir)
assert r.columns == ['b', 'c']
out = r.to_pandas()
for i, row in out.iterrows():
assert row.b in list(df[(df.a==row.a)&(df.c==row.c)].b)
def test_empty_groupby(tempdir):
df = pd.DataFrame({'a': np.random.choice(['a', 'b', None], size=1000),
'b': np.random.randint(0, 64000, size=1000),
'c': np.random.choice([True, False], size=1000)})
df.loc[499:, 'c'] = True # no False in second half
writer.write(tempdir, df, partition_on=['a', 'c'], file_scheme='hive',
row_group_offsets=[0, 500])
r = ParquetFile(tempdir)
assert r.count() == sum(~df.a.isnull())
assert len(r.row_groups) == 6
out = r.to_pandas()
for i, row in out.iterrows():
assert row.b in list(df[(df.a==row.a)&(df.c==row.c)].b)
def test_too_many_partition_columns(tempdir):
df = pd.DataFrame({'a': np.random.choice(['a', 'b', 'c'], size=1000),
'c': np.random.choice([True, False], size=1000)})
with pytest.raises(ValueError) as ve:
writer.write(tempdir, df, partition_on=['a', 'c'], file_scheme='hive')
assert "Cannot include all columns" in str(ve.value)
def test_read_partitioned_and_write_with_empty_partions(tempdir):
df = pd.DataFrame({'a': np.random.choice(['a', 'b', 'c'], size=1000),
'c': np.random.choice([True, False], size=1000)})
writer.write(tempdir, df, partition_on=['a'], file_scheme='hive')
df_filtered = ParquetFile(tempdir).to_pandas(
filters=[('a', '==', 'b')]
)
writer.write(tempdir, df_filtered, partition_on=['a'], file_scheme='hive')
df_loaded = ParquetFile(tempdir).to_pandas()
tm.assert_frame_equal(df_filtered, df_loaded, check_categorical=False)
@pytest.mark.parametrize('compression', ['GZIP',
'gzip',
None,
{'x': 'GZIP'},
{'y': 'gzip', 'x': None}])
def test_write_compression_dict(tempdir, compression):
df = pd.DataFrame({'x': [1, 2, 3],
'y': [1., 2., 3.]})
fn = os.path.join(tempdir, 'tmp.parq')
writer.write(fn, df, compression=compression)
r = ParquetFile(fn)
df2 = r.to_pandas()
tm.assert_frame_equal(df, df2, check_categorical=False, check_dtype=False)
def test_write_compression_schema(tempdir):
df = pd.DataFrame({'x': [1, 2, 3],
'y': [1., 2., 3.]})
fn = os.path.join(tempdir, 'tmp.parq')
writer.write(fn, df, compression={'x': 'gzip'})
r = ParquetFile(fn)
assert all(c.meta_data.codec for row in r.row_groups
for c in row.columns
if c.meta_data.path_in_schema == ['x'])
assert not any(c.meta_data.codec for row in r.row_groups
for c in row.columns
if c.meta_data.path_in_schema == ['y'])
def test_index(tempdir):
import json
fn = os.path.join(tempdir, 'tmp.parq')
df = pd.DataFrame({'x': [1, 2, 3],
'y': [1., 2., 3.]},
index=pd.Index([10, 20, 30], name='z'))
writer.write(fn, df)
pf = ParquetFile(fn)
assert set(pf.columns) == {'x', 'y', 'z'}
meta = json.loads(pf.key_value_metadata['pandas'])
assert meta['index_columns'] == ['z']
out = pf.to_pandas()
assert out.index.name == 'z'
pd.testing.assert_frame_equal(df, out, check_dtype=False)
out = pf.to_pandas(index=False)
assert out.index.name is None
assert (out.index == range(3)).all()
assert (out.z == df.index).all()
def test_duplicate_columns(tempdir):
fn = os.path.join(tempdir, 'tmp.parq')
df = pd.DataFrame(np.arange(12).reshape(4, 3), columns=list('aaa'))
with pytest.raises(ValueError) as e:
write(fn, df)
assert 'duplicate' in str(e.value)
@pytest.mark.parametrize('cmp', [None, 'gzip'])
def test_cmd_bytesize(tempdir, cmp):
fn = os.path.join(tempdir, 'tmp.parq')
df = pd.DataFrame({'s': ['a', 'b']}, dtype='category')
write(fn, df, compression=cmp)
pf = ParquetFile(fn)
chunk = pf.row_groups[0].columns[0]
cmd = chunk.meta_data
csize = cmd.total_compressed_size
f = cencoding.NumpyIO(open(fn, 'rb').read())
f.seek(cmd.dictionary_page_offset)
ph = cencoding.from_buffer(f, name="PageHeader")
c1 = ph.compressed_page_size
f.seek(c1, 1)
ph = cencoding.from_buffer(f, "PageHeader")
c2 = ph.compressed_page_size
f.seek(c2, 1)
assert csize == f.tell() - cmd.dictionary_page_offset
def test_dotted_column(tempdir):
fn = os.path.join(tempdir, 'tmp.parq')
df = pd.DataFrame({'x.y': [1, 2, 3],
'y': [1., 2., 3.]})
writer.write(fn, df)
out = ParquetFile(fn).to_pandas()
assert list(out.columns) == ['x.y', 'y']
def test_naive_index(tempdir):
fn = os.path.join(tempdir, 'tmp.parq')
df = pd.DataFrame({'x': [1, 2, 3],
'y': [1., 2., 3.]})
writer.write(fn, df)
r = ParquetFile(fn)
assert set(r.columns) == {'x', 'y'}
writer.write(fn, df, write_index=True)
r = ParquetFile(fn)
assert set(r.columns) == {'x', 'y', 'index'}
def test_text_convert(tempdir):
df = pd.DataFrame({'a': [u'π'] * 100,
'b': [b'a'] * 100})
fn = os.path.join(tempdir, 'tmp.parq')
write(fn, df, fixed_text={'a': 2, 'b': 1}, stats=True)
pf = ParquetFile(fn)
assert pf._schema[1].type == parquet_thrift.Type.FIXED_LEN_BYTE_ARRAY
assert pf._schema[1].type_length == 2
assert pf._schema[2].type == parquet_thrift.Type.FIXED_LEN_BYTE_ARRAY
assert pf._schema[2].type_length == 1
assert pf.statistics['max']['a'] == [u'π']
df2 = pf.to_pandas()
tm.assert_frame_equal(df, df2, check_categorical=False)
write(fn, df, stats=True)
pf = ParquetFile(fn)
assert pf._schema[1].type == parquet_thrift.Type.BYTE_ARRAY
assert pf._schema[2].type == parquet_thrift.Type.BYTE_ARRAY
assert pf.statistics['max']['a'] == [u'π']
df2 = pf.to_pandas()
tm.assert_frame_equal(df, df2, check_categorical=False)
write(fn, df, fixed_text={'a': 2}, stats=True)
pf = ParquetFile(fn)
assert pf._schema[1].type == parquet_thrift.Type.FIXED_LEN_BYTE_ARRAY
assert pf._schema[2].type == parquet_thrift.Type.BYTE_ARRAY
assert pf.statistics['max']['a'] == [u'π']
df2 = pf.to_pandas()
tm.assert_frame_equal(df, df2, check_categorical=False)
def test_null_time(tempdir):
"""Test reading a file that contains null records."""
tmp = str(tempdir)
expected = pd.DataFrame({"t": [np.timedelta64(), np.timedelta64('NaT')]})
fn = os.path.join(tmp, "test-time-null.parquet")
# with NaT
write(fn, expected, has_nulls=False)
p = ParquetFile(fn)
data = p.to_pandas()
assert (data['t'] == expected['t'])[~expected['t'].isnull()].all()
assert sum(data['t'].isnull()) == sum(expected['t'].isnull())
# with NULL
write(fn, expected, has_nulls=True)
p = ParquetFile(fn)
data = p.to_pandas()
assert (data['t'] == expected['t'])[~expected['t'].isnull()].all()
assert sum(data['t'].isnull()) == sum(expected['t'].isnull())
def test_auto_null_object(tempdir):
tmp = str(tempdir)
df = pd.DataFrame({'a': [1, 2, 3, 0],
'aa': pd.Series([1, 2, 3, None], dtype=object),
'b': [1., 2., 3., np.nan],
'c': pd.to_timedelta([1, 2, 3, np.nan], unit='ms'),
'd': ['a', 'b', 'c', None],
'f': [True, False, True, True],
'ff': [True, False, None, True]}) # object
df['e'] = df['d'].astype('category')
df['bb'] = df['b'].astype('object')
df['aaa'] = df['a'].astype('object')
object_cols = ['d', 'ff', 'bb', 'aaa', 'aa']
test_cols = list(set(df) - set(object_cols) - {"c"}) + ['d']
fn = os.path.join(tmp, "test.parq")
with pytest.raises(ValueError):
write(fn, df, has_nulls=False)
write(fn, df, has_nulls=True)
pf = ParquetFile(fn)
for col in pf._schema[1:]:
assert col.repetition_type == parquet_thrift.FieldRepetitionType.OPTIONAL
df2 = pf.to_pandas(categories=['e'])
assert df2.c.equals(df.c)
tm.assert_frame_equal(df[test_cols], df2[test_cols], check_categorical=False,
check_dtype=False)
tm.assert_frame_equal(df[['bb']].astype('float64'), df2[['bb']])
tm.assert_frame_equal(df[['aa']].astype('Int64'), df2[['aa']])
tm.assert_frame_equal(df[['ff']].astype("boolean"), df2[['ff']])
tm.assert_frame_equal(df[['aaa']].astype('int64'), df2[['aaa']])
# 'infer' is equivalent of None, previous default
write(fn, df, has_nulls='infer')
pf = ParquetFile(fn)
for col in pf._schema[1:]:
if col.name in object_cols:
assert col.repetition_type == parquet_thrift.FieldRepetitionType.OPTIONAL
else:
assert col.repetition_type == parquet_thrift.FieldRepetitionType.REQUIRED
df2 = pf.to_pandas()
tm.assert_frame_equal(df[test_cols], df2[test_cols], check_categorical=False)
tm.assert_frame_equal(df[['ff']].astype('boolean'), df2[['ff']])
tm.assert_frame_equal(df[['bb']].astype('float64'), df2[['bb']])
tm.assert_frame_equal(df[['aaa']].astype('int64'), df2[['aaa']])
@pytest.mark.parametrize('n', (10, 127, 2**8 + 1, 2**16 + 1))
def test_many_categories(tempdir, n):
tmp = str(tempdir)
cats = np.arange(n)
# Use of a seed as discussed in
# https://github.com/dask/fastparquet/pull/701#issuecomment-971927547
rng = np.random.default_rng(4)
codes = rng.integers(0, n, size=1000000)
df = pd.DataFrame({'x': pd.Categorical.from_codes(codes, cats), 'y': 1})
fn = os.path.join(tmp, "test.parq")
write(fn, df, has_nulls=False)
pf = ParquetFile(fn)
out = pf.to_pandas(categories={'x': n})
tm.assert_frame_equal(df, out, check_categorical=False, check_dtype=False)
df.set_index('x', inplace=True)
write(fn, df, has_nulls=False, write_index=True)
pf = ParquetFile(fn)
out = pf.to_pandas(categories={'x': n}, index='x')
assert (out.index == df.index).all()
assert (out.y == df.y).all()
def test_write_partitioned_with_empty_categories(tempdir):
df = pd.DataFrame({
'b': np.random.random(size=1000),
'a': pd.Series(np.random.choice(['x', 'z'], size=1000)).astype(
CategoricalDtype(categories=['x', 'y', 'z'])
),
})
write(tempdir, df, partition_on=['a'], file_scheme='hive', write_index=True)
out = ParquetFile(tempdir).to_pandas()
assert_frame_equal(out, df, check_like=True, check_categorical=False, check_names=False)
def test_autocat(tempdir):
tmp = str(tempdir)
fn = os.path.join(tmp, "test.parq")
data = pd.DataFrame({'o': pd.Categorical(
np.random.choice(['hello', 'world'], size=1000))})
write(fn, data)
pf = ParquetFile(fn)
assert 'o' in pf.categories
assert pf.categories['o'] == 2
assert str(pf.dtypes['o']) == 'category'
out = pf.to_pandas()
assert out.dtypes['o'] == 'category'
out = pf.to_pandas(categories={})
assert str(out.dtypes['o']) != 'category'
out = pf.to_pandas(categories=['o'])
assert out.dtypes['o'].kind == 'O'
out = pf.to_pandas(categories={'o': 2})
assert out.dtypes['o'].kind == 'O'
@pytest.mark.parametrize('row_groups', ([0], [0, 2]))
@pytest.mark.parametrize('dirs', (['', ''], ['cat=1', 'cat=2']))
def test_merge(tempdir, dirs, row_groups):
fn = str(tempdir)
default_mkdirs(os.path.join(fn, dirs[0]))
df0 = pd.DataFrame({'a': [1, 2, 3, 4]})
fn0 = os.sep.join([fn, dirs[0], 'out0.parq'])
write(fn0, df0, row_group_offsets=row_groups)
default_mkdirs(os.path.join(fn, dirs[1]))
df1 = pd.DataFrame({'a': [5, 6, 7, 8]})
fn1 = os.sep.join([fn, dirs[1], 'out1.parq'])
write(fn1, df1, row_group_offsets=row_groups)
# with file-names
pf = writer.merge([fn0, fn1])
assert len(pf.row_groups) == 2 * len(row_groups)
out = pf.to_pandas().a.tolist()
assert out == [1, 2, 3, 4, 5, 6, 7, 8]
if "cat=1" in dirs:
assert 'cat' in pf.cats
# with instances
pf = writer.merge([ParquetFile(fn0), ParquetFile(fn1)])
assert len(pf.row_groups) == 2 * len(row_groups)
out = pf.to_pandas().a.tolist()
assert out == [1, 2, 3, 4, 5, 6, 7, 8]
if "cat=1" in dirs:
assert 'cat' in pf.cats
def test_merge_s3(tempdir, s3):
fn = str(tempdir)
df0 = pd.DataFrame({'a': [1, 2, 3, 4]})
fn0 = TEST_DATA + '/out0.parq'
write(fn0, df0, open_with=s3.open)
df1 = pd.DataFrame({'a': [5, 6, 7, 8]})
fn1 = TEST_DATA + '/out1.parq'
write(fn1, df1, open_with=s3.open)
# with file-names
pf = writer.merge([fn0, fn1], open_with=s3.open)
assert len(pf.row_groups) == 2
out = pf.to_pandas().a.tolist()
assert out == [1, 2, 3, 4, 5, 6, 7, 8]
def test_merge_fail(tempdir):
fn = str(tempdir)
df0 = pd.DataFrame({'a': [1, 2, 3, 4]})
fn0 = os.sep.join([fn, 'out0.parq'])
write(fn0, df0)
df1 = pd.DataFrame({'a': ['a', 'b', 'c']})
fn1 = os.sep.join([fn, 'out1.parq'])
write(fn1, df1)
with pytest.raises(ValueError) as e:
writer.merge([fn0, fn1])
assert 'schemas' in str(e.value)
def test_append_simple(tempdir):
fn = os.path.join(str(tempdir), 'test.parq')
df = pd.DataFrame({'a': [1, 2, 3, 0],
'b': ['a', 'a', 'b', 'b']})
write(fn, df, write_index=False)
write(fn, df, append=True, write_index=False)
pf = ParquetFile(fn)
assert pf.fmd.num_rows == 8
expected = pd.concat([df, df], ignore_index=True)
pd.testing.assert_frame_equal(
pf.to_pandas(), expected, check_categorical=False, check_dtype=False)
@pytest.mark.parametrize('scheme', ('hive', 'simple'))
def test_append_empty(tempdir, scheme):
fn = os.path.join(str(tempdir), 'test.parq')
df = pd.DataFrame({'a': [1, 2, 3, 0],
'b': ['a', 'a', 'b', 'b']})
write(fn, df.head(0), write_index=False, file_scheme=scheme)
pf = ParquetFile(fn)
assert pf.count() == 0
assert pf.file_scheme == 'empty'
write(fn, df, append=True, write_index=False, file_scheme=scheme)
pf = ParquetFile(fn)
pd.testing.assert_frame_equal(
pf.to_pandas(), df, check_categorical=False, check_dtype=False)
@pytest.mark.parametrize('row_groups', ([0], [0, 2]))
@pytest.mark.parametrize('partition', ([], ['b']))
def test_append(tempdir, row_groups, partition):
fn = str(tempdir)
df0 = pd.DataFrame({'a': [1, 2, 3, 0],
'b': ['a', 'b', 'a', 'b'],
'c': True})
df1 = pd.DataFrame({'a': [4, 5, 6, 7],
'b': ['a', 'b', 'a', 'b'],
'c': False})
write(fn, df0, partition_on=partition, file_scheme='hive',
row_group_offsets=row_groups)
write(fn, df1, partition_on=partition, file_scheme='hive',
row_group_offsets=row_groups, append=True)
pf = ParquetFile(fn)
expected = pd.concat([df0, df1], ignore_index=True)
assert len(pf.row_groups) == 2 * len(row_groups) * (len(partition) + 1)
items_out = {tuple(row[1])
for row in pf.to_pandas()[['a', 'b', 'c']].iterrows()}
items_in = {tuple(row[1])
for row in expected.iterrows()}
assert items_in == items_out
def test_append_fail(tempdir):
fn = str(tempdir)
df0 = pd.DataFrame({'a': [1, 2, 3, 0],
'b': ['a', 'b', 'a', 'b'],
'c': True})
df1 = pd.DataFrame({'a': [4, 5, 6, 7],
'b': ['a', 'b', 'a', 'b'],
'c': False})
write(fn, df0, file_scheme='hive')
with pytest.raises(ValueError) as e:
write(fn, df1, file_scheme='simple', append=True)
assert 'existing file scheme' in str(e.value)
fn2 = os.path.join(fn, 'temp.parq')
write(fn2, df0, file_scheme='simple')
with pytest.raises(ValueError) as e:
write(fn2, df1, file_scheme='hive', append=True)
assert 'existing file scheme' in str(e.value)
def test_append_fail_incompatible(tempdir):
fn = os.path.join(str(tempdir), 'test.parq')
df1 = pd.DataFrame({'a': [1, 2, 3, 0],
'b': ['a', 'a', 'b', 'b']})
df2 = pd.DataFrame({'a': [1, 2, 3, 0]})
write(fn, df1, file_scheme='simple')
with pytest.raises(ValueError, match="^Column names"):
write(fn, df2, file_scheme='simple', append=True)
pd.testing.assert_frame_equal(ParquetFile(fn).to_pandas(), df1)
def test_append_w_partitioning(tempdir):
fn = str(tempdir)
df = pd.DataFrame({'a': np.random.choice([1, 2, 3], size=50),
'b': np.random.choice(['hello', 'world'], size=50),
'c': np.random.randint(50, size=50)})
write(fn, df, file_scheme='hive', partition_on=['a', 'b'])
write(fn, df, file_scheme='hive', partition_on=['a', 'b'], append=True)
write(fn, df, file_scheme='hive', partition_on=['a', 'b'], append=True)
write(fn, df, file_scheme='hive', partition_on=['a', 'b'], append=True)
pf = ParquetFile(fn)
out = pf.to_pandas()
assert len(out) == 200
assert sorted(out.a)[::4] == sorted(df.a)
with pytest.raises(ValueError):
write(fn, df, file_scheme='hive', partition_on=['a'], append=True)
with pytest.raises(ValueError):
write(fn, df, file_scheme='hive', partition_on=['b', 'a'], append=True)
def test_bad_object_encoding(tempdir):
df = pd.DataFrame({'x': ['a', 'ab']})
with pytest.raises(ValueError) as e:
write(str(tempdir), df, object_encoding='utf-8')
assert "utf-8" in str(e.value)
def test_empty_dataframe(tempdir):
df = pd.DataFrame({'a': [], 'b': []}, dtype=int)
fn = os.path.join(str(tempdir), 'test.parquet')
write(fn, df)
pf = ParquetFile(fn)
out = pf.to_pandas()
assert pf.count() == 0
assert len(out) == 0
assert (out.columns == df.columns).all()
assert pf.statistics
def test_hasnulls_ordering(tempdir):
fname = os.path.join(tempdir, 'temp.parq')
data = pd.DataFrame({'a': np.random.rand(100),
'b': np.random.rand(100),
'c': np.random.rand(100)})
writer.write(fname, data, has_nulls=['a', 'c'])
r = ParquetFile(fname)
assert r._schema[1].name == 'a'
assert r._schema[1].repetition_type == 1
assert r._schema[2].name == 'b'
assert r._schema[2].repetition_type == 0
assert r._schema[3].name == 'c'
assert r._schema[3].repetition_type == 1
def test_cats_in_part_files(tempdir):
df = pd.DataFrame({'a': pd.Categorical(['a', 'b'] * 100)})
writer.write(tempdir, df, file_scheme='hive', row_group_offsets=50)
import glob
files = glob.glob(os.path.join(tempdir, 'part*'))
pf = ParquetFile(tempdir)
assert len(pf.row_groups) == 4
kv = pf.fmd.key_value_metadata
assert kv
for f in files:
pf = ParquetFile(f)
assert pf.fmd.key_value_metadata == kv
assert len(pf.row_groups) == 1
out = pd.concat([ParquetFile(f).to_pandas() for f in files],
ignore_index=True)
pd.testing.assert_frame_equal(df, out)
def test_cats_and_nulls(tempdir):
df = pd.DataFrame({'x': pd.Categorical([1, 2, 1])})
fn = os.path.join(tempdir, 'temp.parq')
write(fn, df)
pf = ParquetFile(fn)
assert not pf.schema.is_required('x')
out = pf.to_pandas()
assert out.dtypes['x'] == 'category'
assert out.x.tolist() == [1, 2, 1]
def test_consolidate_cats(tempdir):
import json
df = pd.DataFrame({'x': pd.Categorical([1, 2, 1])})
fn = os.path.join(tempdir, 'temp.parq')
write(fn, df)
pf = ParquetFile(fn)
assert 2 == json.loads(pf.fmd.key_value_metadata[0].value)['columns'][0][
'metadata']['num_categories']
start = pf.row_groups[0].columns[0].meta_data.key_value_metadata[0].value
assert start == b'2'
pf.row_groups[0].columns[0].meta_data[8][0][2] = b'5' # metadata.key_value_metadata[0].value
writer.consolidate_categories(pf.fmd)
assert 5 == json.loads(pf.fmd.key_value_metadata[0].value)['columns'][0][
'metadata']['num_categories']
def test_bad_object_encoding(tempdir):
df = pd.DataFrame({'a': [b'00']})
with pytest.raises(ValueError) as e:
write(tempdir, df, file_scheme='hive', object_encoding='utf8')
assert "UTF8" in str(e.value)
assert "bytes" in str(e.value)
assert '"a"' in str(e.value)
df = pd.DataFrame({'a': [0, "hello", 0]})
with pytest.raises(ValueError) as e:
write(tempdir, df, file_scheme='hive', object_encoding='int')
assert "INT64" in str(e.value)
assert "primitive" in str(e.value)
assert '"a"' in str(e.value)
def test_object_encoding_int32(tempdir):
df = pd.DataFrame({'a': ['15', None, '2']})
fn = os.path.join(tempdir, 'temp.parq')
write(fn, df, object_encoding={'a': 'int32'})
pf = ParquetFile(fn)
assert pf._schema[1].type == parquet_thrift.Type.INT32
assert not pf.schema.is_required('a')
def test_custom_metadata(tempdir):
df = pd.DataFrame({'a': [15]})
fn = os.path.join(tempdir, 'temp.parq')
write(fn, df, custom_metadata={"hello": "world"})
pf = ParquetFile(fn)
assert pf.key_value_metadata['hello'] == 'world'
def test_cat_order(tempdir):
# #629
fn = os.path.join(tempdir, 'temp.parq')
cat = ['hot', 'moderate', 'cold']
catdtype = pd.CategoricalDtype(cat, ordered=True)
val = [30, -10, 10]
cities = ['Lisbonne', 'Paris', 'Paris']
df = pd.DataFrame({'val': val, 'cat': cat, 'city': cities})
df['cat'] = df['cat'].astype(catdtype)
write(fn, df, file_scheme='hive', partition_on=['city'])
out = ParquetFile(fn).to_pandas()
assert out.cat.cat.ordered
assert out.cat.cat.categories.tolist() == catdtype.categories.tolist()
@pytest.mark.parametrize("tz", [True, False])
def test_tz_local(tempdir, tz):
# #650
fn = os.path.join(tempdir, 'temp.parq')
df = pd.DataFrame({'a': [pd.Timestamp("now")]})
if tz:
df['a'] = df.a.dt.tz_localize("UTC")
write(fn, df)
pf = ParquetFile(fn)
assert pf.schema.schema_element(['a']).logicalType.TIMESTAMP.isAdjustedToUTC is tz
def test_no_stats(tempdir):
fn = os.path.join(tempdir, 'temp.parq')
df = pd.DataFrame({'a': [0], 'b': [0.], 'c': ["hi"], 'd': pd.to_datetime([0])})
write(fn, df, stats=False)
pf = ParquetFile(fn)
assert pf.row_groups[0].columns[0].meta_data.statistics.max is None
assert pf.row_groups[0].columns[1].meta_data.statistics.max is None
write(fn, df, stats=['a'])
pf = ParquetFile(fn)
assert pf.row_groups[0].columns[0].meta_data.statistics.max is not None
assert pf.row_groups[0].columns[1].meta_data.statistics.max is None
write(fn, df, stats="auto")
pf = ParquetFile(fn)
assert pf.row_groups[0].columns[0].meta_data.statistics.max is not None
assert pf.row_groups[0].columns[1].meta_data.statistics.max is not None
assert pf.row_groups[0].columns[2].meta_data.statistics.max is None
assert pf.row_groups[0].columns[3].meta_data.statistics.max is not None
def test_float(tempdir):
fn = os.path.join(tempdir, 'temp.parq')
df = pd.DataFrame({"s": ["a", "b", "c", "d"], "v": [1, 2, 3, pd.NA]})
df = df.astype({"s": "string", "v": "Float64"})
write(fn, df, stats=False)
out = ParquetFile(fn).to_pandas()
assert (out.v == df.v).all()
def test_empty_columns(tempdir):
fn = os.path.join(tempdir, 'temp.parq')
df = pd.DataFrame(
{
"a": [None],
"b": ["a"],
"c": [b"a"],
"d": [b""]
}
)
df = df.assign(aa=df.a.astype("string"), bb=df.b.astype("string"))
write(fn, df, stats=False)
pf = ParquetFile(fn)
out = pf.to_pandas()
assert out.iloc[0].to_dict() == {'a': None, 'b': 'a', 'c': b'a', 'd': b'', 'aa': None, 'bb': 'a'}
def test_no_string(tmpdir):
fn = os.path.join(tmpdir, 'temp.parq')
df = pd.DataFrame({"A": ["2", "3", "4"]})
# cast to Pandas nullable StringDtype
df["A"] = df["A"].astype(pd.StringDtype())
# set *all* values to NA
df["A"].iloc[0] = pd.NA
df["A"].iloc[1] = pd.NA
df["A"].iloc[2] = pd.NA
df.to_parquet(fn, engine="fastparquet")
df2 = pd.read_parquet(fn)
assert pd.isna(df2.A).all()
@pytest.fixture
def df():
yield pd.DataFrame(data={"a": [1]})
@pytest.fixture
def pf_fn(tmp_path):
yield str(tmp_path.joinpath("tmp.parquet"))
@pytest.mark.parametrize("md_value", [None, True, 1, 1.0, 1j, [], {}, set()])
def test_custom_metadata_write_reject_value_not_str_bytes(df, pf_fn, md_value):
with pytest.raises(TypeError):
write(pf_fn, df, custom_metadata={"my_key": md_value})
@pytest.mark.parametrize("md_key", [None, True, 1, 1.0, 1j, (), frozenset()])
def test_custom_metadata_write_reject_key_not_str_bytes(df, pf_fn, md_key):
with pytest.raises(TypeError):
write(pf_fn, df, custom_metadata={md_key: "abc"})
@pytest.fixture
def pf_kvm_fn(df, tmp_path):
fn = str(tmp_path.joinpath("tmp_with_kvm.parquet"))
write(fn, df, custom_metadata={"k0": "abc", "k1": "efg"})
yield fn
@pytest.mark.parametrize("md_value", [True, 1, 1.0, 1j, [], {}, set()])
def test_custom_metadata_update_reject_value_not_str_bytes_none(pf_kvm_fn, md_value):
# `None` values are used in `update_file_custom_metadata` to indicate key removal
with pytest.raises(TypeError):
update_file_custom_metadata(pf_kvm_fn, {"k1": md_value})
@pytest.mark.parametrize("md_key", [None, True, 1, 1.0, 1j, (), frozenset()])
def test_custom_metadata_update_reject_key_not_str_bytes(pf_kvm_fn, md_key):
with pytest.raises(TypeError):
update_file_custom_metadata(pf_kvm_fn, {md_key: "abc"})
@pytest.mark.parametrize(
"md_in,md_out", [
pytest.param({"k": "v"}, {"k": "v"}, id="str_kv"),
pytest.param({b"k": b"v"}, {"k": "v"}, id="bytes_utf8_kv"),
pytest.param({b"\xe2": b"\xe2"}, {b"\xe2": b"\xe2"}, id="bytes_non_utf8_kv"),
]
)
def test_custom_metadata_key_value_decode(df, pf_fn, md_in, md_out):
write(pf_fn, df, custom_metadata=md_in)
kvm = ParquetFile(pf_fn).key_value_metadata
kvm.pop("pandas")
assert kvm == md_out
def test_update_file_custom_metadata(tempdir):
df = pd.DataFrame({'a': [0, 1]})
custom_metadata_ref = {'a':'test_a', 'b': 'test_b'}
write(tempdir, df, file_scheme='hive', custom_metadata=custom_metadata_ref)
# Test custom metadata update in '_metadata'.
custom_metadata_upd = {'a': None, 'b': 'test_b2', 'c': 'test_c', 'd': None}
mdfn = os.path.join(tempdir, '_metadata')
update_file_custom_metadata(mdfn, custom_metadata_upd)
custom_metadata_upd_ref = {key: value
for key, value in custom_metadata_upd.items()
if key not in ['a', 'd']}
pf = ParquetFile(tempdir)
custom_metadata_upd_rec = {key: value
for key, value in pf.key_value_metadata.items()
if key != 'pandas'}
assert custom_metadata_upd_rec == custom_metadata_upd_ref
# Test custom metadata update in 'part.0.parquet'.
# Unmodified yet.
custom_metadata_ref = {key: value
for key, value in custom_metadata_ref.items()}
datafn = os.path.join(tempdir, 'part.0.parquet')
pf = ParquetFile(datafn)
custom_metadata_rec = {key: value
for key, value in pf.key_value_metadata.items()
if key != 'pandas'}
assert custom_metadata_rec == custom_metadata_ref
# Modify them in 'part.0.parquet' and check.
update_file_custom_metadata(datafn, custom_metadata_upd)
pf = ParquetFile(datafn)
custom_metadata_upd_rec = {key: value
for key, value in pf.key_value_metadata.items()
if key != 'pandas'}
assert custom_metadata_upd_rec == custom_metadata_upd_ref
def test_update_file_custom_metadata_2(tempdir):
# Modifying metadata in a parquet file, specifying it is a parquet file.
df = pd.DataFrame([1, 2, 3], columns=["a"])
fn = os.path.join(tempdir, "data.parquet")
write(fn, df)
metadata = {"version": "1"}
update_file_custom_metadata(fn, custom_metadata=metadata, is_metadata_file=False)
pf = ParquetFile(fn)
assert pf.key_value_metadata["version"] == "1"
def test_json_stats(tempdir):
# https://github.com/dask/fastparquet/issues/775
df = pd.DataFrame(
[{'a': [(1, 2, 4), ('x', 'y', 'z')]}]
)
fn = os.path.join(tempdir, "out.parq")
write(filename=fn, data=df, object_encoding={'a': 'json'}, write_index=False, compression="SNAPPY")
out = ParquetFile(fn).to_pandas()
assert out['a'].tolist() == [[[1, 2, 4], ['x', 'y', 'z']]] # tuple became list
def test_original_type_without_stats(tempdir):
# https://github.com/dask/fastparquet/issues/775
df = pd.DataFrame([{'b': 65}])
fn = os.path.join(tempdir, "out.parq")
write(fn, df, stats=False)
out = ParquetFile(fn).to_pandas()
assert out.dtypes["b"] == "int64"
def test_roundtrip_pathlib_path(tempdir):
df = pd.DataFrame([{'a': 42, 'b': 100}])
file_path = Path(tempdir) / "out.parq"
write(file_path, df)
out = ParquetFile(file_path).to_pandas()
assert out.to_dict() == df.to_dict()
def test_pagesize(monkeypatch, tempdir):
monkeypatch.setattr(writer, "MAX_PAGE_SIZE", 50)
fn = os.path.join(tempdir, "out.parq")
# 480 bytes + 60/8 because optional -> 10 pages
df = pd.DataFrame({'a': [0, 1, 2] * 20}, dtype="int64")
write(fn, df)
pf = ParquetFile(fn)
col = pf.row_groups[0].columns[0]
assert col.meta_data.dictionary_page_offset is None
assert col.file_offset == 4
assert col.meta_data.statistics.max == b'\x02\x00\x00\x00\x00\x00\x00\x00'
assert col.meta_data.data_page_offset == 4
enc = col.meta_data.encoding_stats
assert len(enc) == 1
assert enc[0].count == 10
out = pf.to_pandas()
assert out.to_dict() == df.to_dict()
def test_pagesize_cat(monkeypatch, tempdir):
monkeypatch.setattr(writer, "MAX_PAGE_SIZE", 10)
fn = os.path.join(tempdir, "out.parq")
# 60 bytes + 60/8 because optional -> 8 pages
df = pd.DataFrame({'a': ["0", "1", "2"] * 20}, dtype="category")
write(fn, df)
pf = ParquetFile(fn)
col = pf.row_groups[0].columns[0]
assert col.meta_data.dictionary_page_offset == 4
assert col.file_offset == 4
assert col.meta_data.statistics.max is None
assert col.meta_data.data_page_offset > 4
enc = col.meta_data.encoding_stats
assert len(enc) == 2
assert enc[0].count == 1 # dict comes first
assert enc[1].count == 8 # dict comes first
out = pf.to_pandas()
assert out.to_dict() == df.to_dict()
def test_nested_infer(tempdir):
# https://github.com/dask/fastparquet/issues/846
fn = os.path.join(tempdir, "out.parq")
df = pd.DataFrame({"A": np.array([[1.1, 1.2], [], None], dtype=object)})
df.to_parquet(path=fn, engine="fastparquet")
df2 = pd.read_parquet(fn, engine="fastparquet")
assert df.to_dict() == df2.to_dict()
def test_attrs_roundtrip(tempdir):
fn = os.path.join(tempdir, "out.parq")
attrs = {"oi": 5}
df = pd.DataFrame({"A": np.array([[1.1, 1.2], [], None], dtype=object)})
df.attrs = attrs
df.to_parquet(path=fn, engine="fastparquet")
df2 = pd.read_parquet(fn, engine="fastparquet")
assert df2.attrs == attrs
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