1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
|
#/*##########################################################################
#
# The fisx library for X-Ray Fluorescence
#
# Copyright (c) 2014-2020 European Synchrotron Radiation Facility
#
# This file is part of the fisx X-ray developed by V.A. Sole
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in
# all copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
# THE SOFTWARE.
#
#############################################################################*/
import numpy
import sys
cimport cython
from cython.operator cimport dereference as deref
from libcpp.string cimport string as std_string
from libcpp.vector cimport vector as std_vector
from libcpp.map cimport map as std_map
from Elements cimport *
from Detector cimport *
from fisx.FisxCythonTools import toBytes, toBytesKeys, toBytesKeysAndValues, toString, toStringKeys, toStringKeysAndValues, toStringList
cdef class PyDetector:
cdef Detector *thisptr
def __cinit__(self, materialName, double density=1.0, double thickness=1.0, double funny=1.0):
self.thisptr = new Detector(toBytes(materialName), density, thickness, funny)
def __dealloc__(self):
del self.thisptr
def getTransmission(self, energies, PyElements elementsLib, double angle=90.):
if not hasattr(energies, "__len__"):
energies = numpy.array([energies], numpy.float64)
return self.thisptr.getTransmission(energies, deref(elementsLib.thisptr), angle)
def setActiveArea(self, double area):
self.thisptr.setActiveArea(area)
def setDiameter(self, double value):
self.thisptr.setDiameter(value)
def getActiveArea(self):
return self.thisptr.getActiveArea()
def getDiameter(self):
return self.thisptr.getDiameter()
def setDistance(self, double value):
self.thisptr.setDistance(value)
def getDistance(self):
return self.thisptr.getDistance()
def setMaximumNumberOfEscapePeaks(self, int n):
self.thisptr.setMaximumNumberOfEscapePeaks(n)
def getEscape(self, double energy, PyElements elementsLib, label="", int update=1):
label_ = toBytes(label)
if sys.version < "3.0":
if update:
return self.thisptr.getEscape(energy, deref(elementsLib.thisptr), label_, 1)
else:
return self.thisptr.getEscape(energy, deref(elementsLib.thisptr), label_, 0)
else:
if update:
return toStringKeysAndValues(self.thisptr.getEscape(energy, deref(elementsLib.thisptr), label_, 1))
else:
return toStringKeysAndValues(self.thisptr.getEscape(energy, deref(elementsLib.thisptr), label_, 0))
def getEscapePeakEnergyThreshold(self):
return self.thisptr.getEscapePeakEnergyThreshold()
def getEscapePeakIntensityThreshold(self):
return self.thisptr.getEscapePeakIntensityThreshold()
def getEscapePeakNThreshold(self):
return self.thisptr.getEscapePeakNThreshold()
def getEscapePeakAlphaIn(self):
return self.thisptr.getEscapePeakAlphaIn()
def getThickness(self):
return self.thisptr.getThickness()
def getDensity(self):
return self.thisptr.getDensity()
def getComposition(self, PyElements elementsLib):
if sys.version < "3.0":
return self.thisptr.getComposition(deref(elementsLib.thisptr))
else:
return toStringKeysAndValues(self.thisptr.getComposition(deref(elementsLib.thisptr)))
|
