1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
|
#/*##########################################################################
#
# The fisx library for X-Ray Fluorescence
#
# Copyright (c) 2014-2016 European Synchrotron Radiation Facility
#
# This file is part of the fisx X-ray developed by V.A. Sole
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in
# all copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
# THE SOFTWARE.
#
#############################################################################*/
cimport cython
from libcpp.string cimport string as std_string
from libcpp.vector cimport vector as std_vector
from libcpp.map cimport map as std_map
from Element cimport *
cdef class PyElement:
cdef Element *thisptr
def __cinit__(self, name, z = 0):
self.thisptr = new Element(toBytes(name), z)
def __dealloc__(self):
del self.thisptr
def setName(self, name):
self.thisptr.setName(toBytes(name))
def setAtomicNumber(self, int z):
self.thisptr.setAtomicNumber(z)
def getAtomicNumber(self):
return self.thisptr.getAtomicNumber()
def setBindingEnergies(self, std_map[std_string, double] energies):
self.thisptr.setBindingEnergies(energies)
def getBindingEnergies(self):
return self.thisptr.getBindingEnergies()
def setMassAttenuationCoefficients(self,
std_vector[double] energies,
std_vector[double] photo,
std_vector[double] coherent,
std_vector[double] compton,
std_vector[double] pair):
self.thisptr.setMassAttenuationCoefficients(energies,
photo,
coherent,
compton,
pair)
def _getDefaultMassAttenuationCoefficients(self):
return self.thisptr.getMassAttenuationCoefficients()
def _getSingleMassAttenuationCoefficients(self, double energy):
return self.thisptr.getMassAttenuationCoefficients(energy)
def getMassAttenuationCoefficients(self, energy=None):
if energy is None:
return self._getDefaultMassAttenuationCoefficients()
elif hasattr(energy, "__len__"):
return self._getMultipleMassAttenuationCoefficients(energy)
else:
return self._getMultipleMassAttenuationCoefficients([energy])
def _getMultipleMassAttenuationCoefficients(self, std_vector[double] energy):
return self.thisptr.getMassAttenuationCoefficients(energy)
def setRadiativeTransitions(self, shell,
std_vector[std_string] labels,
std_vector[double] values):
self.thisptr.setRadiativeTransitions(toBytes(shell), labels, values)
def getRadiativeTransitions(self, shell):
return self.thisptr.getRadiativeTransitions(toBytes(shell))
def setNonradiativeTransitions(self, shell,
std_vector[std_string] labels,
std_vector[double] values):
self.thisptr.setNonradiativeTransitions(toBytes(shell), labels, values)
def getNonradiativeTransitions(self, shell):
return self.thisptr.getNonradiativeTransitions(toBytes(shell))
def setShellConstants(self, shell,
std_map[std_string, double] valuesDict):
self.thisptr.setShellConstants(toBytes(shell), valuesDict)
def getShellConstants(self, shell):
return self.thisptr.getShellConstants(toBytes(shell))
#def getXRayLines(self, std_string shell):
# return self.thisptr.getXRayLines(shell)
def getXRayLinesFromVacancyDistribution(self,
std_map[std_string, double] vacancyDict):
return self.thisptr.getXRayLinesFromVacancyDistribution(\
vacancyDict)
|
