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#/*##########################################################################
#
# The fisx library for X-Ray Fluorescence
#
# Copyright (c) 2014-2023 European Synchrotron Radiation Facility
#
# This file is part of the fisx X-ray developed by V.A. Sole
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in
# all copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
# THE SOFTWARE.
#
#############################################################################*/
import numpy
#cimport numpy as np
cimport cython
from cython.operator cimport dereference as deref
from libcpp.string cimport string as std_string
from libcpp.vector cimport vector as std_vector
from libcpp.map cimport map as std_map
from libcpp.map cimport pair as std_pair
from operator import itemgetter
from Elements cimport *
from Material cimport *
from Layer cimport *
cdef class PyLayer:
cdef Layer *thisptr
def __cinit__(self, materialName, double density=1.0, double thickness=1.0, double funny=1.0):
self.thisptr = new Layer(toBytes(materialName), density, thickness, funny)
def __dealloc__(self):
del self.thisptr
def getComposition(self, PyElements elementsLib):
"""
getComposition(elementsLib)
Given a reference to an elements library, it gives back a dictionary where the keys are the
elements and the values the mass fractions.
"""
return toStringKeys(self.thisptr.getComposition(deref(elementsLib.thisptr)))
def getTransmission(self, energies, PyElements elementsLib, double angle=90.):
"""
getTransmission(energies, ElementsLibraryInstance, angle=90.)
Given a list of energies and a reference to an elements library returns
the layer transmission according to the incident angle (default 90.)
"""
if not hasattr(energies, "__len__"):
energies = numpy.array([energies], numpy.float64)
return self.thisptr.getTransmission(energies, deref(elementsLib.thisptr), angle)
def setMaterial(self, PyMaterial material):
"""
setMaterial(MaterialInstance)
Set the material of the layer. It has to be an instance!
"""
self.thisptr.setMaterial(deref(material.thisptr))
def getPeakFamilies(self, double energy, PyElements elementsLib):
"""
getPeakFamilies(energy, ElementsLibraryInstance)
Given an energy and a reference to an elements library return a list of pairs.
First is the peak family ("Si K", "Pb L1", ...) and second the value the binding energy.
"""
tmpResult = self.thisptr.getPeakFamilies(energy, deref(elementsLib.thisptr))
return [(toString(x[0]), x[1]) for x in sorted(tmpResult, key=itemgetter(1))]
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