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#!/usr/bin/make -f
SHELL=bash # needed for the <(echo …) process subsitution temporary file
DH_VERBOSE := 1
include /usr/share/dpkg/pkg-info.mk
export PYBUILD_NAME=gffutils
export PYBUILD_TEST_ARGS=--doctest-modules -m 'not slow'
export PYBUILD_TEST_PYTEST=true
export PYBUILD_AFTER_TEST=find . -name tmp.db -delete
%:
dh $@ --buildsystem=pybuild
override_dh_auto_build:
dh_auto_build
PYTHONPATH=$(CURDIR) PATH=$(CURDIR)/gffutils/scripts/:$(PATH) \
help2man --version-string=${DEB_VERSION_UPSTREAM} --no-info \
--name="Command line interface for python-gffutils." \
gffutils-cli > debian/gffutils-cli.1
PYTHONPATH=$(CURDIR) PATH=$(CURDIR)/gffutils/scripts/:$(PATH) \
help2man --version-string=${DEB_VERSION_UPSTREAM} --no-info \
--include <(echo -e "[NAME]\ngffutils-cli_fetch \- Fetch IDs") \
'gffutils-cli fetch' > debian/gffutils-cli-fetch.1
PYTHONPATH=$(CURDIR) PATH=$(CURDIR)/gffutils/scripts/:$(PATH) \
help2man --version-string=${DEB_VERSION_UPSTREAM} --no-info \
--include <(echo -e "[NAME]\ngffutils-cli_children \- Fetch children from the database according to ID") \
'gffutils-cli children' > debian/gffutils-cli-children.1
PYTHONPATH=$(CURDIR) PATH=$(CURDIR)/gffutils/scripts/:$(PATH) \
help2man --version-string=${DEB_VERSION_UPSTREAM} --no-info \
--include <(echo -e "[NAME]\ngffutils-cli_parents \- Fetch parents from the database according to ID") \
'gffutils-cli parents' > debian/gffutils-cli-parents.1
PYTHONPATH=$(CURDIR) PATH=$(CURDIR)/gffutils/scripts/:$(PATH) \
help2man --version-string=${DEB_VERSION_UPSTREAM} --no-info \
--include <(echo -e "[NAME]\ngffutils-cli_region \- Returns features within provided genomic coordinates") \
'gffutils-cli region' > debian/gffutils-cli-region.1
PYTHONPATH=$(CURDIR) PATH=$(CURDIR)/gffutils/scripts/:$(PATH) \
help2man --version-string=${DEB_VERSION_UPSTREAM} --no-info \
--include <(echo -e "[NAME]\ngffutils-cli_create \- Create a database") \
'gffutils-cli create' > debian/gffutils-cli-create.1
PYTHONPATH=$(CURDIR) PATH=$(CURDIR)/gffutils/scripts/:$(PATH) \
help2man --version-string=${DEB_VERSION_UPSTREAM} --no-info \
--include <(echo -e "[NAME]\ngffutils-cli_common \- Identify child features in common") \
'gffutils-cli common' > debian/gffutils-cli-common.1
PYTHONPATH=$(CURDIR) PATH=$(CURDIR)/gffutils/scripts/:$(PATH) \
help2man --version-string=${DEB_VERSION_UPSTREAM} --no-info \
--include <(echo -e "[NAME]\ngffutils-cli_clean \- Perform various QC operations to clean a GFF or GTF file") \
'gffutils-cli clean' > debian/gffutils-cli-clean.1
PYTHONPATH=$(CURDIR) PATH=$(CURDIR)/gffutils/scripts/:$(PATH) \
help2man --version-string=${DEB_VERSION_UPSTREAM} --no-info \
--include <(echo -e "[NAME]\ngffutils-cli_sanitize \- Sanitize a GFF file") \
'gffutils-cli sanitize' > debian/gffutils-cli-sanitize.1
PYTHONPATH=$(CURDIR) PATH=$(CURDIR)/gffutils/scripts/:$(PATH) \
help2man --version-string=${DEB_VERSION_UPSTREAM} --no-info \
--include <(echo -e "[NAME]\ngffutils-cli_rmdups \- Remove duplicates from a GFF file") \
'gffutils-cli rmdups' > debian/gffutils-cli-rmdups.1
override_dh_auto_test:
PATH=$(CURDIR)/gffutils/scripts/:$(PATH) dh_auto_test
override_dh_install:
dh_install
find debian -name "*.bak" -delete
find debian -name "issue_*.db" -delete
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