File: issue174.gtf

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python-gffutils 0.13-4
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# all BCRA2 exons from GCF_000001405.39_GRCh38.p13_genomic.gtf 
NC_000013.11	BestRefSeq	exon	32315508	32315667	.	+	.	gene_id "BRCA2"; transcript_id "NM_000059.4"; db_xref "Ensembl:ENST00000380152.8"; db_xref "GeneID:675"; gene "BRCA2"; product "BRCA2 DNA repair associated"; tag "MANE Select"; transcript_biotype "mRNA"; exon_number "1"; 
NC_000013.11	BestRefSeq	exon	32316422	32316527	.	+	.	gene_id "BRCA2"; transcript_id "NM_000059.4"; db_xref "Ensembl:ENST00000380152.8"; db_xref "GeneID:675"; gene "BRCA2"; product "BRCA2 DNA repair associated"; tag "MANE Select"; transcript_biotype "mRNA"; exon_number "2"; 
NC_000013.11	BestRefSeq	exon	32319077	32319325	.	+	.	gene_id "BRCA2"; transcript_id "NM_000059.4"; db_xref "Ensembl:ENST00000380152.8"; db_xref "GeneID:675"; gene "BRCA2"; product "BRCA2 DNA repair associated"; tag "MANE Select"; transcript_biotype "mRNA"; exon_number "3"; 
NC_000013.11	BestRefSeq	exon	32325076	32325184	.	+	.	gene_id "BRCA2"; transcript_id "NM_000059.4"; db_xref "Ensembl:ENST00000380152.8"; db_xref "GeneID:675"; gene "BRCA2"; product "BRCA2 DNA repair associated"; tag "MANE Select"; transcript_biotype "mRNA"; exon_number "4"; 
NC_000013.11	BestRefSeq	exon	32326101	32326150	.	+	.	gene_id "BRCA2"; transcript_id "NM_000059.4"; db_xref "Ensembl:ENST00000380152.8"; db_xref "GeneID:675"; gene "BRCA2"; product "BRCA2 DNA repair associated"; tag "MANE Select"; transcript_biotype "mRNA"; exon_number "5"; 
NC_000013.11	BestRefSeq	exon	32326242	32326282	.	+	.	gene_id "BRCA2"; transcript_id "NM_000059.4"; db_xref "Ensembl:ENST00000380152.8"; db_xref "GeneID:675"; gene "BRCA2"; product "BRCA2 DNA repair associated"; tag "MANE Select"; transcript_biotype "mRNA"; exon_number "6"; 
NC_000013.11	BestRefSeq	exon	32326499	32326613	.	+	.	gene_id "BRCA2"; transcript_id "NM_000059.4"; db_xref "Ensembl:ENST00000380152.8"; db_xref "GeneID:675"; gene "BRCA2"; product "BRCA2 DNA repair associated"; tag "MANE Select"; transcript_biotype "mRNA"; exon_number "7"; 
NC_000013.11	BestRefSeq	exon	32329443	32329492	.	+	.	gene_id "BRCA2"; transcript_id "NM_000059.4"; db_xref "Ensembl:ENST00000380152.8"; db_xref "GeneID:675"; gene "BRCA2"; product "BRCA2 DNA repair associated"; tag "MANE Select"; transcript_biotype "mRNA"; exon_number "8"; 
NC_000013.11	BestRefSeq	exon	32330919	32331030	.	+	.	gene_id "BRCA2"; transcript_id "NM_000059.4"; db_xref "Ensembl:ENST00000380152.8"; db_xref "GeneID:675"; gene "BRCA2"; product "BRCA2 DNA repair associated"; tag "MANE Select"; transcript_biotype "mRNA"; exon_number "9"; 
NC_000013.11	BestRefSeq	exon	32332272	32333387	.	+	.	gene_id "BRCA2"; transcript_id "NM_000059.4"; db_xref "Ensembl:ENST00000380152.8"; db_xref "GeneID:675"; gene "BRCA2"; product "BRCA2 DNA repair associated"; tag "MANE Select"; transcript_biotype "mRNA"; exon_number "10"; 
NC_000013.11	BestRefSeq	exon	32336265	32341196	.	+	.	gene_id "BRCA2"; transcript_id "NM_000059.4"; db_xref "Ensembl:ENST00000380152.8"; db_xref "GeneID:675"; gene "BRCA2"; product "BRCA2 DNA repair associated"; tag "MANE Select"; transcript_biotype "mRNA"; exon_number "11"; 
NC_000013.11	BestRefSeq	exon	32344558	32344653	.	+	.	gene_id "BRCA2"; transcript_id "NM_000059.4"; db_xref "Ensembl:ENST00000380152.8"; db_xref "GeneID:675"; gene "BRCA2"; product "BRCA2 DNA repair associated"; tag "MANE Select"; transcript_biotype "mRNA"; exon_number "12"; 
NC_000013.11	BestRefSeq	exon	32346827	32346896	.	+	.	gene_id "BRCA2"; transcript_id "NM_000059.4"; db_xref "Ensembl:ENST00000380152.8"; db_xref "GeneID:675"; gene "BRCA2"; product "BRCA2 DNA repair associated"; tag "MANE Select"; transcript_biotype "mRNA"; exon_number "13"; 
NC_000013.11	BestRefSeq	exon	32354861	32355288	.	+	.	gene_id "BRCA2"; transcript_id "NM_000059.4"; db_xref "Ensembl:ENST00000380152.8"; db_xref "GeneID:675"; gene "BRCA2"; product "BRCA2 DNA repair associated"; tag "MANE Select"; transcript_biotype "mRNA"; exon_number "14"; 
NC_000013.11	BestRefSeq	exon	32356428	32356609	.	+	.	gene_id "BRCA2"; transcript_id "NM_000059.4"; db_xref "Ensembl:ENST00000380152.8"; db_xref "GeneID:675"; gene "BRCA2"; product "BRCA2 DNA repair associated"; tag "MANE Select"; transcript_biotype "mRNA"; exon_number "15"; 
NC_000013.11	BestRefSeq	exon	32357742	32357929	.	+	.	gene_id "BRCA2"; transcript_id "NM_000059.4"; db_xref "Ensembl:ENST00000380152.8"; db_xref "GeneID:675"; gene "BRCA2"; product "BRCA2 DNA repair associated"; tag "MANE Select"; transcript_biotype "mRNA"; exon_number "16"; 
NC_000013.11	BestRefSeq	exon	32362523	32362693	.	+	.	gene_id "BRCA2"; transcript_id "NM_000059.4"; db_xref "Ensembl:ENST00000380152.8"; db_xref "GeneID:675"; gene "BRCA2"; product "BRCA2 DNA repair associated"; tag "MANE Select"; transcript_biotype "mRNA"; exon_number "17"; 
NC_000013.11	BestRefSeq	exon	32363179	32363533	.	+	.	gene_id "BRCA2"; transcript_id "NM_000059.4"; db_xref "Ensembl:ENST00000380152.8"; db_xref "GeneID:675"; gene "BRCA2"; product "BRCA2 DNA repair associated"; tag "MANE Select"; transcript_biotype "mRNA"; exon_number "18"; 
NC_000013.11	BestRefSeq	exon	32370402	32370557	.	+	.	gene_id "BRCA2"; transcript_id "NM_000059.4"; db_xref "Ensembl:ENST00000380152.8"; db_xref "GeneID:675"; gene "BRCA2"; product "BRCA2 DNA repair associated"; tag "MANE Select"; transcript_biotype "mRNA"; exon_number "19"; 
NC_000013.11	BestRefSeq	exon	32370956	32371100	.	+	.	gene_id "BRCA2"; transcript_id "NM_000059.4"; db_xref "Ensembl:ENST00000380152.8"; db_xref "GeneID:675"; gene "BRCA2"; product "BRCA2 DNA repair associated"; tag "MANE Select"; transcript_biotype "mRNA"; exon_number "20"; 
NC_000013.11	BestRefSeq	exon	32376670	32376791	.	+	.	gene_id "BRCA2"; transcript_id "NM_000059.4"; db_xref "Ensembl:ENST00000380152.8"; db_xref "GeneID:675"; gene "BRCA2"; product "BRCA2 DNA repair associated"; tag "MANE Select"; transcript_biotype "mRNA"; exon_number "21"; 
NC_000013.11	BestRefSeq	exon	32379317	32379515	.	+	.	gene_id "BRCA2"; transcript_id "NM_000059.4"; db_xref "Ensembl:ENST00000380152.8"; db_xref "GeneID:675"; gene "BRCA2"; product "BRCA2 DNA repair associated"; tag "MANE Select"; transcript_biotype "mRNA"; exon_number "22"; 
NC_000013.11	BestRefSeq	exon	32379750	32379913	.	+	.	gene_id "BRCA2"; transcript_id "NM_000059.4"; db_xref "Ensembl:ENST00000380152.8"; db_xref "GeneID:675"; gene "BRCA2"; product "BRCA2 DNA repair associated"; tag "MANE Select"; transcript_biotype "mRNA"; exon_number "23"; 
NC_000013.11	BestRefSeq	exon	32380007	32380145	.	+	.	gene_id "BRCA2"; transcript_id "NM_000059.4"; db_xref "Ensembl:ENST00000380152.8"; db_xref "GeneID:675"; gene "BRCA2"; product "BRCA2 DNA repair associated"; tag "MANE Select"; transcript_biotype "mRNA"; exon_number "24"; 
NC_000013.11	BestRefSeq	exon	32394689	32394933	.	+	.	gene_id "BRCA2"; transcript_id "NM_000059.4"; db_xref "Ensembl:ENST00000380152.8"; db_xref "GeneID:675"; gene "BRCA2"; product "BRCA2 DNA repair associated"; tag "MANE Select"; transcript_biotype "mRNA"; exon_number "25"; 
NC_000013.11	BestRefSeq	exon	32396898	32397044	.	+	.	gene_id "BRCA2"; transcript_id "NM_000059.4"; db_xref "Ensembl:ENST00000380152.8"; db_xref "GeneID:675"; gene "BRCA2"; product "BRCA2 DNA repair associated"; tag "MANE Select"; transcript_biotype "mRNA"; exon_number "26"; 
NC_000013.11	BestRefSeq	exon	32398162	32400268	.	+	.	gene_id "BRCA2"; transcript_id "NM_000059.4"; db_xref "Ensembl:ENST00000380152.8"; db_xref "GeneID:675"; gene "BRCA2"; product "BRCA2 DNA repair associated"; tag "MANE Select"; transcript_biotype "mRNA"; exon_number "27";