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python-gffutils 0.13-4
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2L	REDfly CRMs	regulatory_region	521276	523442	.	+	.	ID=FBsf0000436105;Name=ush_−2190/−25;Dbxref=REDfly:RFRC:0000003441;library=REDfly CRMs:FBlc0000493;associated_genes=ush:FBgn0003963

2L	REDfly CRMs	regulatory_region	522046	523442	.	+	.	ID=FBsf0000435995;Name=ush_−1421/−25;Dbxref=REDfly:RFRC:0000003445;library=REDfly CRMs:FBlc0000493;associated_genes=ush:FBgn0003963

2L	REDfly CRMs	regulatory_region	522223	522511	.	+	.	ID=FBsf0000435380;Name=ush_−1243/−956;Dbxref=REDfly:RFRC:0000003446;library=REDfly CRMs:FBlc0000493;associated_genes=ush:FBgn0003963

2L	REDfly CRMs	regulatory_region	523221	523442	.	+	.	ID=FBsf0000436776;Name=ush_−237/−25;Dbxref=REDfly:RFRC:0000003440;library=REDfly CRMs:FBlc0000493;associated_genes=ush:FBgn0003963

2L	REDfly CRMs	regulatory_region	523294	523442	.	+	.	ID=FBsf0000435507;Name=ush_−174/−25;Dbxref=REDfly:RFRC:0000003443;library=REDfly CRMs:FBlc0000493;associated_genes=ush:FBgn0003963

2L	REDfly CRMs	regulatory_region	523294	523382	.	+	.	ID=FBsf0000435624;Name=ush_−174/−85;Dbxref=REDfly:RFRC:0000003442;library=REDfly CRMs:FBlc0000493;associated_genes=ush:FBgn0003963

2L	FlyBase	deletion	3465511	3465513	.	-	.	ID=msl-2[γ136]_deletion;Name=msl-2[gamma136];related_allele=FBal0044190;evidence=experimental

2L	REDfly CRMs	regulatory_region	5981378	5981759	.	+	.	ID=FBsf0000435512;Name=eIF-4a_p5′-436eIF4awt-luc/lacZ;Dbxref=REDfly:RFRC:0000003426;library=REDfly CRMs:FBlc0000493;associated_genes=eIF-4a:FBgn0001942

2L	FlyBase	sequence_variant	13832278	13832278	.	-	.	ID=DNApol-γ35[2]_sequence_variant;Name=DNApol-gamma35[2];related_allele=FBal0008426;evidence=experimental

2R	FlyBase	rescue_fragment	19828269	19837527	.	+	.	ID=G-sα60A[+t10]_rescue_fragment;Name=G-salpha60A[+t10];related_allele=FBal0126533;evidence=experimental;linked_to=BamHI-BamHI_rfrag

3L	FlyBase	gene	1778485	1795328	.	-	.	ID=FBgn0250789;Name=alpha-Spec;fullname=alpha Spectrin;Alias=FBgn0026231,FBgn0064128,FBgn0025219,FBgn0002180,FBgn0003470,alpha-Spectrin,alphaSpec,alpha-spectrin,alpha-Spec,klo,klotzchen,spectrin,alpha-spec,Spectrin,alpha-spectrin II,alpha spectrin,alpha,CG1977,dre3,3A9,l(3)04276,unnamed,alpha-Spc,l(3)dre3,l(3)alpha-Spec,l(3)62Bd,anon-fast-evolving-2E2,anon-EST:fe2E2,alfa-Spec,aSpc 3A9,alphaSpectrin,alpha-SPECTRIN,alpha Spectrin,Spec,alpha-Spe,alpha-Spect,Alpha-spectrin,alphaSp,α-spectrin,alpha-Sp,Alpha Spectrin,FCP-B,FBtr0072789;Ontology_term=GO:0048790,SO:0000704,GO:0007417,SO:0000010,SO:0000087,GO:0002168,GO:0007308,!GO:0008302,GO:0030727,GO:0007294,GO:0045169,GO:0045170,GO:0008092,GO:0008091,GO:0007274,GO:0007010,GO:0003779,GO:0005509,GO:0005856,GO:0005886,GO:0045478,GO:0030721,GO:0042062,GO:0007026,GO:0050807,GO:0048134,GO:0016337,GO:0008360,GO:0005516,GO:0030707,GO:0007009,GO:0008017,GO:0005794,GO:0005938,GO:0005811,GO:0031594,GO:0016323,GO:0016199,SO:0000548;Dbxref=GB_protein:AAF47569,INTERPRO:IPR018159,INTERPRO:IPR018247,FlyBase_Annotation_IDs:CG1977,GB:Z31891,GB:S67765,GB:S67762,GB:M26400,GB:CZ479169,GB:CZ473640,GB:CZ473639,GB:CZ468635,GB:AY069741,GB:AW944063,GB:AQ026196,GB:AI257862,GB:AC005557,GB:AA433258,GB_protein:AAB29442,GB_protein:AAB29441,GB_protein:AAA28907,GB_protein:AAL39886,NRL_3D:2SPCB,NRL_3D:2SPCA,PDB:2SPC,INTERPRO:IPR014837,INTERPRO:IPR013315,INTERPRO:IPR011992,INTERPRO:IPR002048,INTERPRO:IPR002017,INTERPRO:IPR001452,FlyBase:FBan0001977,UniProt/Swiss-Prot:P13395,GB_protein:AGB93983,GB_protein:AGB93982,GB_protein:AGB93981,UniProt/TrEMBL:M9PGV6,UniProt/TrEMBL:M9PBI5,UniProt/TrEMBL:M9PDQ0,OrthoDB7_Drosophila:EOG75N7F2,OrthoDB7_Diptera:EOG7HQZR1,EntrezGene:38231,BDGP_clone:LP06350,OrthoDB7_Insecta:EOG7MHBX0,OrthoDB7_Arthropoda:EOG7HJ85V,OrthoDB7_Metazoa:EOG7GXP9K,InterologFinder:38231,BIOGRID:63763,GenomeRNAi:38231,INTERACTIVEFLY:/cytoskel/spectrn1.htm,SignaLink:P13395;gbunit=AE014296;derived_computed_cyto=62B4-62B4

3L	FlyBase	rescue_fragment	9673037	9679204	.	+	.	ID=αTub67C[+t7]_rescue_fragment;Name=alphaTub67C[+t7];related_allele=FBal0033258;evidence=experimental;linked_to=BamHI-BamHI_rfrag

3L	FlyBase	rescue_fragment	14992102	14994879	.	+	.	ID=Prosβ2[+t2.7]_rescue_fragment;Name=Prosbeta2[+t2.7];related_allele=FBal0095638;evidence=experimental;linked_to=PstI-EcoRI_rfrag

3L	FlyBase	point_mutation	23095833	23095833	.	+	.	ID=CkIIalpha[Tik]-1_point_mutation;Name=CkIIα[Tik]-1;related_allele=FBal0141857;evidence=experimental;reported_pr_change=M161K;na_change=T23095833A;pr_change=M161K | CkIIalpha-PA%3B M161K | CkIIalpha-PB%3B M161K | CkIIalpha-PC%3B M161K | CkIIalpha-PD

3L	FlyBase	point_mutation	23095846	23095846	.	+	.	ID=CkIIalpha[Tik]-2_point_mutation;Name=CkIIα[Tik]-2;related_allele=FBal0141857;evidence=experimental;reported_pr_change=E165D;na_change=A23095846Y;pr_change=E165D | CkIIalpha-PA%3B E165D | CkIIalpha-PB%3B E165D | CkIIalpha-PC%3B E165D | CkIIalpha-PD

3L	FlyBase	sequence_variant	23096051	23096077	.	+	.	ID=CkIIα[TikR]_sequence_variant;Name=CkIIalpha[TikR];related_allele=FBal0141856;evidence=experimental

3R	FlyBase	rescue_fragment	5233725	5238390	.	-	.	ID=βTub85D[+t4.55]_rescue_fragment;Name=betaTub85D[+t4.55];related_allele=FBal0044541;evidence=experimental;linked_to=SalI-XbaI_rfrag

3R	FlyBase	rescue_fragment	11133414	11142985	.	+	.	ID=Tm2[+tΔ-2500]_rescue_fragment;Name=Tm2[+tDelta-2500];related_allele=FBal0051837;evidence=experimental;linked_to=START-KpnI_rfrag

3R	FlyBase	deletion	17203134	17204657	.	+	.	ID=tin[142Δ32]_deletion;Name=tin[142Delta32];related_allele=FBal0035783;evidence=experimental

3R	FlyBase	deletion	17203134	17204518	.	+	.	ID=tin[142Δ36]_deletion;Name=tin[142Delta36];related_allele=FBal0122884;evidence=experimental

3R	FlyBase	deletion	19990679	19990681	.	+	.	ID=Apc2[ΔS]_deletion;Name=Apc2[DeltaS];related_allele=FBal0101822;evidence=experimental

3R	FlyBase	rescue_fragment	21816363	21824637	.	+	.	ID=HLHmδ[+t6]_rescue_fragment;Name=HLHmdelta[+t6];related_allele=FBal0033736;linked_to=EcoRI-EcoRI_rfrag

3R	FlyBase	point_mutation	25869630	25869630	.	+	.	ID=Sry-delta[SF1]-1_point_mutation;Name=Sry-δ[SF1]-1;related_allele=FBal0016088;evidence=experimental;na_change=A25869630G;pr_change=I144V|Sry-delta-PA;reported_na_change=A430G;reported_pr_change=I144V

3R	FlyBase	point_mutation	25869948	25869948	.	+	.	ID=Sry-delta[SF1]-2_point_mutation;Name=Sry-δ[SF1]-2;related_allele=FBal0016088;evidence=experimental;na_change=G25869948A;pr_change=E250K|Sry-delta-PA;reported_na_change=G751A;reported_pr_change=E251K

X	FlyBase	rescue_fragment	15753067	15756919	.	+	.	ID=Gβ13F[+tSa]_rescue_fragment;Name=Gbeta13F[+tSa];related_allele=FBal0128191;evidence=experimental